Parental gene:

ARF1, ENSG00000143761

Aliases:None
Description:ADP-ribosylation factor 1 [Source:HGNC Symbol;Acc:652]
Organism:Human (Homo sapiens)
Coordinates:1:228270360..228286912(+)


>ENSG00000143761
ATGGGGAACATCTTCGCCAACCTCTTCAAGGGCCTTTTTGGCAAAAAAGAAATGCGCATCCTCATGGTGGGCCTGGATGC
TGCAGGGAAGACCACGATCCTCTACAAGCTTAAGCTGGGTGAGATCGTGACCACCATTCCCACCATAGGCTTCAACGTGG
AAACCGTGGAGTACAAGAACATCAGCTTCACTGTGTGGGACGTGGGTGGCCAGGACAAGATCCGGCCCCTGTGGCGCCAC
TACTTCCAGAACACACAAGGCCTGATCTTCGTGGTGGACAGCAATGACAGAGAGCGTGTGAACGAGGCCCGTGAGGAGCT
CATGAGGATGCTGGCCGAGGACGAGCTCCGGGATGCTGTCCTCCTGGTGTTCGCCAACAAGCAGGACCTCCCCAACGCCA
TGAATGCGGCCGAGATCACAGACAAGCTGGGGCTGCACTCACTACGCCACAGGAACTGGTACATTCAGGCCACCTGCGCC
ACCAGCGGCGACGGGCTCTATGAAGGACTGGACTGGCTGTCCAATCAGCTCCGGAACCAGAAGTGA

Library Parental gene expression (RPM)
bodymap2_liver 188 .17 RPM
bodymap2_lung 436 .08 RPM
bodymap2_breast 148 .99 RPM
bodymap2_adipose 224 .28 RPM
bodymap2_adrenal 197 .98 RPM
bodymap2_skeletal_muscle 314 .49 RPM
bodymap2_thyroid 198 .10 RPM
bodymap2_prostate 278 .44 RPM
bodymap2_colon 202 .31 RPM
bodymap2_testis 234 .06 RPM
bodymap2_brain 155 .22 RPM
bodymap2_heart 152 .25 RPM
bodymap2_white_blood_cells 319 .26 RPM
bodymap2_lymph_node 226 .92 RPM
bodymap2_ovary 175 .38 RPM
bodymap2_kidney 223 .68 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000016671 possible_ortholog 10 retrogenes
retro_cjac_1295, retro_cjac_1691, retro_cjac_1719, retro_cjac_2189, retro_cjac_2896, retro_cjac_300, retro_cjac_3181, retro_cjac_3311, retro_cjac_3335, retro_cjac_390,
Cavia porcellus ENSCPOG00000021174 ortholog_one2one 1 retrogene
retro_cpor_1310,
Ciona savignyi ENSCSAVG00000007011 possible_ortholog 1 retrogene
retro_csav_2,
Felis catus ENSFCAG00000029374 ortholog_one2one 1 retrogene
retro_fcat_1829,
Homo sapiens ENSG00000134108 other_paralog 1 retrogene
retro_hsap_361,
Homo sapiens ENSG00000134287 within_species_paralog 1 retrogene
retro_hsap_36,
Homo sapiens ENSG00000168374 within_species_paralog 2 retrogenes
retro_hsap_1296, retro_hsap_4221,
Gallus gallus ENSGALG00000005393 ortholog_one2one 1 retrogene
retro_ggal_7,
Gorilla gorilla ENSGGOG00000011263 ortholog_one2one 5 retrogenes
retro_ggor_161, retro_ggor_2531, retro_ggor_3071, retro_ggor_801, retro_ggor_906,
Latimeria chalumnae ENSLACG00000019009 possible_ortholog 1 retrogene
retro_lcha_10,
Myotis lucifugus ENSMLUG00000007020 possible_ortholog 6 retrogenes
retro_mluc_1631, retro_mluc_242, retro_mluc_2605, retro_mluc_428, retro_mluc_511, retro_mluc_876,
Mus musculus ENSMUSG00000048076 ortholog_one2one 1 retrogene
retro_mmus_1718,
Oryctolagus cuniculus ENSOCUG00000023645 ortholog_one2one 2 retrogenes
retro_ocun_1137, retro_ocun_247,
Pan troglodytes ENSPTRG00000002066 possible_ortholog 2 retrogenes
retro_ptro_112, retro_ptro_5,
Tupaia belangeri ENSTBEG00000009218 ortholog_one2one 9 retrogenes
retro_tbel_1943, retro_tbel_2224, retro_tbel_2310, retro_tbel_2358, retro_tbel_2662, retro_tbel_2770, retro_tbel_3103, retro_tbel_4217, retro_tbel_4624,
Tetraodon nigroviridis ENSTNIG00000011685 possible_ortholog 1 retrogene
retro_tnig_19,
Tursiops truncatus ENSTTRG00000014186 ortholog_one2one 2 retrogenes
retro_ttru_1679, retro_ttru_347,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_1008 69.78 99.45
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2. retro_hsap_1160 82.78 98.90
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3. retro_hsap_3763 75.82 100.00
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Download FASTA sequences of all ENSG00000143761 retrocopies