RetrogeneDB ID: | retro_mmus_1718 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 18:46870821..46871103(+) | ||
Located in intron of: | ENSMUSG00000024481 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Arf1 | ||
Ensembl ID: | ENSMUSG00000048076 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor 1 [Source:MGI Symbol;Acc:MGI:99431] |
Percent Identity: | 65.69 % |
Parental protein coverage: | 55.25 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKNISFTVWDVG |
MGNIF.NLF.G.FGK.E..IL.VGLDAAGKT.ILYKLKLG....T.I.T.GFN..TVE.KNISF.VW..G | |
Retrocopy | MGNIFENLFSGQFGKVEVCILTVGLDAAGKT-ILYKLKLGN>VTT-ISTVGFNMATVENKNISFFVWVAG |
Parental | GQDKIRPLWRHYFQNTQ-GLIFVVDSNDRERV |
.QDKIR........NTQ.GLIF..D.ND.ERV | |
Retrocopy | IQDKIRCFFQ----NTQ<GLIFMMDGNDKERV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 206 .71 RPM |
SRP007412_cerebellum | 0 .00 RPM | 147 .63 RPM |
SRP007412_heart | 0 .03 RPM | 168 .82 RPM |
SRP007412_kidney | 0 .00 RPM | 178 .19 RPM |
SRP007412_liver | 0 .00 RPM | 159 .78 RPM |
SRP007412_testis | 0 .14 RPM | 109 .77 RPM |
Species | RetrogeneDB ID |
---|---|
Rattus norvegicus | retro_rnor_1348 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000016671 | 10 retrocopies | |
Cavia porcellus | ENSCPOG00000021174 | 1 retrocopy | |
Ciona savignyi | ENSCSAVG00000007011 | 1 retrocopy | |
Felis catus | ENSFCAG00000029374 | 1 retrocopy | |
Homo sapiens | ENSG00000143761 | 3 retrocopies | |
Gallus gallus | ENSGALG00000005393 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000011263 | 5 retrocopies | |
Latimeria chalumnae | ENSLACG00000019009 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007020 | 6 retrocopies | |
Mus musculus | ENSMUSG00000048076 | 1 retrocopy |
retro_mmus_1718 ,
|
Mus musculus | ENSMUSG00000051853 | 1 retrocopy | |
Mus musculus | ENSMUSG00000062421 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000023645 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000002066 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000009218 | 9 retrocopies | |
Tetraodon nigroviridis | ENSTNIG00000011685 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000014186 | 2 retrocopies |