Parental gene: | U2AF1, ENSG00000160201 |
| Aliases: | U2AF1, FP793, RN, RNU2AF1, U2AF35, U2AFBP |
| Description: | U2 small nuclear RNA auxiliary factor 1 [Source:HGNC Symbol;Acc:12453] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 21:44513065..44527697(-) |
>ENSG00000160201
ATGGCGGAGTATCTGGCCTCCATCTTCGGCACCGAGAAAGACAAAGTCAACTGTTCATTTTATTTCAAAATTGGAGCATG
TCGTCATGGAGACAGGTGCTCTCGGTTGCACAATAAACCGACGTTTAGCCAGACCATTGCCCTCTTGAACATTTACCGTA
ACCCTCAAAACTCTTCCCAGTCTGCTGACGGTTTGCGCTGTGCCGTGAGCGATGTGGAGATGCAGGAACACTATGATGAG
TTTTTTGAGGAGGTTTTTACAGAAATGGAGGAGAAGTATGGGGAAGTAGAGGAGATGAACGTCTGTGACAACCTGGGAGA
CCACCTGGTGGGGAACGTGTACGTCAAGTTTCGCCGTGAGGAAGATGCGGAAAAGGCTGTGATTGACTTGAATAACCGTT
GGTTTAATGGACAGCCGATCCACGCCGAGCTGTCACCCGTGACGGACTTCAGAGAAGCCTGCTGCCGTCAGTATGAGATG
GGAGAATGCACACGAGGCGGCTTCTGCAACTTCATGCATTTGAAGCCCATTTCCAGAGAGCTGCGGCGGGAGCTGTATGG
CCGCCGTCGCAAGAAGCATAGATCAAGATCCCGATCCCGGGAGCGTCGTTCTCGGTCTAGAGACCGTGGTCGTGGCGGTG
GCGGTGGCGGTGGTGGAGGTGGCGGCGGACGGGAGCGTGACAGGAGGCGGTCGAGAGATCGTGAAAGATCTGGGCGATTC
TGA
ATGGCGGAGTATCTGGCCTCCATCTTCGGCACCGAGAAAGACAAAGTCAACTGTTCATTTTATTTCAAAATTGGAGCATG
TCGTCATGGAGACAGGTGCTCTCGGTTGCACAATAAACCGACGTTTAGCCAGACCATTGCCCTCTTGAACATTTACCGTA
ACCCTCAAAACTCTTCCCAGTCTGCTGACGGTTTGCGCTGTGCCGTGAGCGATGTGGAGATGCAGGAACACTATGATGAG
TTTTTTGAGGAGGTTTTTACAGAAATGGAGGAGAAGTATGGGGAAGTAGAGGAGATGAACGTCTGTGACAACCTGGGAGA
CCACCTGGTGGGGAACGTGTACGTCAAGTTTCGCCGTGAGGAAGATGCGGAAAAGGCTGTGATTGACTTGAATAACCGTT
GGTTTAATGGACAGCCGATCCACGCCGAGCTGTCACCCGTGACGGACTTCAGAGAAGCCTGCTGCCGTCAGTATGAGATG
GGAGAATGCACACGAGGCGGCTTCTGCAACTTCATGCATTTGAAGCCCATTTCCAGAGAGCTGCGGCGGGAGCTGTATGG
CCGCCGTCGCAAGAAGCATAGATCAAGATCCCGATCCCGGGAGCGTCGTTCTCGGTCTAGAGACCGTGGTCGTGGCGGTG
GCGGTGGCGGTGGTGGAGGTGGCGGCGGACGGGAGCGTGACAGGAGGCGGTCGAGAGATCGTGAAAGATCTGGGCGATTC
TGA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 28 .73 RPM |
| bodymap2_lung | 78 .25 RPM |
| bodymap2_breast | 54 .67 RPM |
| bodymap2_adipose | 66 .41 RPM |
| bodymap2_adrenal | 146 .60 RPM |
| bodymap2_skeletal_muscle | 34 .50 RPM |
| bodymap2_thyroid | 115 .44 RPM |
| bodymap2_prostate | 69 .21 RPM |
| bodymap2_colon | 78 .91 RPM |
| bodymap2_testis | 70 .10 RPM |
| bodymap2_brain | 69 .34 RPM |
| bodymap2_heart | 28 .93 RPM |
| bodymap2_white_blood_cells | 54 .73 RPM |
| bodymap2_lymph_node | 65 .18 RPM |
| bodymap2_ovary | 105 .08 RPM |
| bodymap2_kidney | 59 .62 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Equus caballus | ENSECAG00000015558 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000169249 | within_species_paralog | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000011460 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000022769 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000061613 | ortholog_one2one | 3 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000014737 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000016504 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000011463 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_790 | 83.87 | 74.25 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_1478 | 88.57 | 87.50 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000160201 retrocopies