Parental gene:

U2AF1, ENSMMUG00000022769

Aliases:None
Description:None
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:3:3570401..3584990(+)


>ENSMMUG00000022769
ATGGCGGAGTATCTGGCCTCCATCTTCGGCACCGAGAAAGACAAAGTCAACTGTTCATTTTATTTCAAAATTGGAGCATG
TCGTCATGGAGACAGGTGCTCTCGGTTGCACAATAAACCGACGTTTAGCCAGACCATTGCCCTCTTGAACATTTACCGTA
ACCCTCAAAACTCTTCCCAGTCTGCTGACGGTTTGCGCTGTGCCGTGAGCGATGTTGAGATGCAGGAACACTATGATGAA
TTTTTTGAGGAGGTTTTTACAGAAATGGAGGAGAAGTATGGGGAAGTTGAGGAGATGAACGTCTGTGACAACCTGGGAGA
CCACCTGGTGGGGAACGTGTACGTCAAGTTTCGCCGTGAGGAAGATGCGGAAAAGGCTGTGATTGACTTGAATAACCGTT
GGTTTAATGGACAGCCGATCCATGCCGAGCTGTCACCCGTGACGGACTTCAGAGAAGCCTGCTGCCGTCAGTATGAGATG
GGAGAATGCACACGAGGCGGCTTCTGCAACTTCATGCATTTGAAGCCCATTTCCAGAGAGCTGCGGCGGGAGCTGTATGG
GCGCCGTCGCAAGAAGCATAGATCAAGATCCCGATCCCGGGAGCGTCGTTCTCGGTCTAGAGACCGTGGTCGTGGCGGTG
GCGGTGGCGGTGGTGGAGGCGGCGGCGGACGGGAGCGTGACAGGAGGCGGTCGAGAGATCGCGAAAGATCTGGGCGATTC
TGA

Library Parental gene expression (RPM)
SRP007412_brain 19 .61 RPM
SRP007412_brain_prefrontal_cortex 25 .07 RPM
SRP007412_cerebellum 31 .51 RPM
SRP007412_heart 25 .03 RPM
SRP007412_kidney 27 .23 RPM
SRP007412_liver 21 .53 RPM
SRP007412_testis 110 .86 RPM



Species Parental gene accession Homology type Retrogenes number
Equus caballus ENSECAG00000015558 ortholog_one2one 1 retrogene
retro_ecab_1081,
Homo sapiens ENSG00000160201 ortholog_one2one 2 retrogenes
retro_hsap_1478, retro_hsap_790,
Loxodonta africana ENSLAFG00000011460 ortholog_one2one 1 retrogene
retro_lafr_1135,
Macaca mulatta ENSMMUG00000014054 within_species_paralog 1 retrogene
retro_mmul_2030,
Mus musculus ENSMUSG00000061613 ortholog_one2one 3 retrogenes
retro_mmus_1602, retro_mmus_1787, retro_mmus_2955,
Nomascus leucogenys ENSNLEG00000014737 ortholog_one2one 1 retrogene
retro_nleu_2382,
Otolemur garnettii ENSOGAG00000016504 ortholog_one2many 1 retrogene
retro_ogar_241,
Pongo abelii ENSPPYG00000011463 ortholog_one2one 2 retrogenes
retro_pabe_1227, retro_pabe_703,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_1071 78.23 51.67
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2. retro_mmul_2126 74.26 80.84
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Download FASTA sequences of all ENSMMUG00000022769 retrocopies