Parental gene: | U2af1, ENSMUSG00000061613 |
| Aliases: | U2af1, 2010107D16Rik, 35kDa |
| Description: | U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1 [Source:MGI Symbol;Acc:MGI:98884] |
| Organism: | Mouse (Mus musculus) |
| Coordinates: | 17:31647081..31658754(-) |
>ENSMUSG00000061613
ATGGCGGAATACTTGGCCTCCATCTTCGGCACCGAAAAAGACAAAGTCAACTGTTCATTTTATTTCAAAATCGGAGCATG
TCGTCATGGAGACAGATGTTCTCGGTTGCACAATAAACCAACCTTTAGCCAGACCATTGCCCTCTTGAACATTTACCGTA
ACCCTCAAAACTCTTCCCAGTCTGCTGACGGTTTGCGCTGTGCTGTGAGCGACGTGGAGATGCAGGAGCACTATGATGAG
TTCTTTGAGGAAGTCTTCACTGAGATGGAAGAGAAGTACGGGGAAGTCGAGGAGATGAACGTCTGCGACAACCTAGGGGA
CCACCTGGTGGGGAACGTGTATGTCAAGTTTCGACGTGAGGAGGATGCAGAGAAAGCCGTGATCGACTTGAATAACCGTT
GGTTTAATGGACAGCCGATCCATGCAGAGCTGTCCCCAGTAACTGACTTCAGGGAAGCCTGCTGCCGCCAGTATGAAATG
GGAGAGTGCACAAGAGGGGGCTTCTGCAACTTCATGCATTTGAAGCCCATCTCAAGAGAGCTACGACGGGAGCTGTATGG
GCGCCGGCGCAAGAAGCATAGATCCAGGTCCCGATCCAGGGAACGGCGTTCCCGATCCAGAGACCGTGGACGCGGTGGTG
GAGGTGGAGGTGGAGGTGGCGGAGGACGGGAGCGTGACAGGAGGCGGTCAAGAGACCGGGAGAGATCTGGACGATTCTGA
ATGGCGGAATACTTGGCCTCCATCTTCGGCACCGAAAAAGACAAAGTCAACTGTTCATTTTATTTCAAAATCGGAGCATG
TCGTCATGGAGACAGATGTTCTCGGTTGCACAATAAACCAACCTTTAGCCAGACCATTGCCCTCTTGAACATTTACCGTA
ACCCTCAAAACTCTTCCCAGTCTGCTGACGGTTTGCGCTGTGCTGTGAGCGACGTGGAGATGCAGGAGCACTATGATGAG
TTCTTTGAGGAAGTCTTCACTGAGATGGAAGAGAAGTACGGGGAAGTCGAGGAGATGAACGTCTGCGACAACCTAGGGGA
CCACCTGGTGGGGAACGTGTATGTCAAGTTTCGACGTGAGGAGGATGCAGAGAAAGCCGTGATCGACTTGAATAACCGTT
GGTTTAATGGACAGCCGATCCATGCAGAGCTGTCCCCAGTAACTGACTTCAGGGAAGCCTGCTGCCGCCAGTATGAAATG
GGAGAGTGCACAAGAGGGGGCTTCTGCAACTTCATGCATTTGAAGCCCATCTCAAGAGAGCTACGACGGGAGCTGTATGG
GCGCCGGCGCAAGAAGCATAGATCCAGGTCCCGATCCAGGGAACGGCGTTCCCGATCCAGAGACCGTGGACGCGGTGGTG
GAGGTGGAGGTGGAGGTGGCGGAGGACGGGAGCGTGACAGGAGGCGGTCAAGAGACCGGGAGAGATCTGGACGATTCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 17 .66 RPM |
| SRP007412_cerebellum | 23 .36 RPM |
| SRP007412_heart | 14 .72 RPM |
| SRP007412_kidney | 22 .33 RPM |
| SRP007412_liver | 18 .98 RPM |
| SRP007412_testis | 13 .86 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Equus caballus | ENSECAG00000015558 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000160201 | ortholog_one2one | 2 retrogenes | |
| Loxodonta africana | ENSLAFG00000011460 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000022769 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000031370 | within_species_paralog | 1 retrogene | |
| Mus musculus | ENSMUSG00000078765 | within_species_paralog | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000014737 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000016504 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000011463 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmus_1602 | 94.56 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_mmus_1787 | 91.79 | 85.77 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_mmus_2955 | 94.21 | 50.21 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMUSG00000061613 retrocopies