Parental gene:

EIF3F, ENSG00000175390

Aliases:EIF3F, EIF3S5, eIF3-p47
Description:eukaryotic translation initiation factor 3, subunit F [Source:HGNC Symbol;Acc:3275]
Organism:Human (Homo sapiens)
Coordinates:11:7991797..8023409(+)


>ENSG00000175390
ATGGCCACACCGGCGGTACCAGTAAGTGCTCCTCCGGCCACGCCAACCCCAGTCCCGGCGGCGGCCCCAGCCTCAGTTCC
AGCGCCAACGCCAGCACCGGCTGCGGCTCCGGTTCCCGCTGCGGCTCCAGCCTCATCCTCAGACCCTGCGGCAGCAGCGG
CTGCAACTGCGGCTCCTGGCCAGACCCCGGCCTCAGCGCAAGCTCCAGCGCAGACCCCAGCGCCCGCTCTGCCTGGTCCT
GCTCTTCCAGGGCCCTTCCCCGGCGGCCGCGTGGTCAGGCTGCACCCAGTCATTTTGGCCTCCATTGTGGACAGCTACGA
GAGACGCAACGAGGGTGCTGCCCGAGTTATCGGGACCCTGTTGGGAACTGTCGACAAACACTCAGTGGAGGTCACCAATT
GCTTTTCAGTGCCGCACAATGAGTCAGAAGATGAAGTGGCTGTTGACATGGAATTTGCTAAGAATATGTATGAACTGCAT
AAAAAAGTTTCTCCAAATGAGCTCATCCTGGGCTGGTACGCTACGGGCCATGACATCACAGAGCACTCTGTGCTGATCCA
CGAGTACTACAGCCGAGAGGCCCCCAACCCCATCCACCTCACTGTGGACACAAGTCTCCAGAACGGCCGCATGAGCATCA
AAGCCTACGTCAGCACTTTAATGGGAGTCCCTGGGAGGACCATGGGAGTGATGTTCACGCCTCTGACAGTGAAATACGCG
TACTACGACACTGAACGCATCGGAGTTGACCTGATCATGAAGACCTGCTTTAGCCCCAACAGAGTGATTGGACTCTCAAG
TGACTTGCAGCAAGTAGGAGGGGCATCAGCTCGCATCCAGGATGCCCTGAGTACAGTGTTGCAATATGCAGAGGATGTAC
TGTCTGGAAAGGTGTCAGCTGACAATACTGTGGGCCGCTTCCTGATGAGCCTGGTTAACCAAGTACCGAAAATAGTTCCC
GATGACTTTGAGACCATGCTCAACAGCAACATCAATGACCTTTTGATGGTGACCTACCTGGCCAACCTCACACAGTCACA
GATTGCACTCAATGAAAAACTTGTAAACCTGTGA

Library Parental gene expression (RPM)
bodymap2_adipose 123 .58 RPM
bodymap2_adrenal 167 .34 RPM
bodymap2_brain 61 .18 RPM
bodymap2_breast 98 .97 RPM
bodymap2_colon 168 .38 RPM
bodymap2_heart 74 .14 RPM
bodymap2_kidney 83 .03 RPM
bodymap2_liver 43 .79 RPM
bodymap2_lung 104 .24 RPM
bodymap2_lymph_node 130 .82 RPM
bodymap2_ovary 198 .17 RPM
bodymap2_prostate 207 .30 RPM
bodymap2_skeletal_muscle 135 .19 RPM
bodymap2_testis 138 .80 RPM
bodymap2_thyroid 107 .73 RPM
bodymap2_white_blood_cells 225 .27 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000004861 ortholog_one2one 1 retrogene
retro_btau_527,
Callithrix jacchus ENSCJAG00000011903 possible_ortholog 1 retrogene
retro_cjac_1416,
Echinops telfairi ENSETEG00000002717 possible_ortholog 2 retrogenes
retro_etel_1583, retro_etel_35,
Homo sapiens ENSG00000103035 within_species_paralog 2 retrogenes
retro_hsap_1781, retro_hsap_234,
Gorilla gorilla ENSGGOG00000011702 ortholog_one2one 5 retrogenes
retro_ggor_1566, retro_ggor_1567, retro_ggor_1568, retro_ggor_1589, retro_ggor_1590,
Myotis lucifugus ENSMLUG00000000825 possible_ortholog 1 retrogene
retro_mluc_2356,
Otolemur garnettii ENSOGAG00000003220 possible_ortholog 3 retrogenes
retro_ogar_3041, retro_ogar_859, retro_ogar_863,
Pan troglodytes ENSPTRG00000003326 ortholog_one2one 1 retrogene
retro_ptro_197,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_2106 96.70 96.77
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2. retro_hsap_2512 90.37 83.19
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3. retro_hsap_4321 90.33 83.19
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Download FASTA sequences of all ENSG00000175390 retrocopies