Parental gene: | EIF3F, ENSG00000175390 |
| Aliases: | EIF3F, EIF3S5, eIF3-p47 |
| Description: | eukaryotic translation initiation factor 3, subunit F [Source:HGNC Symbol;Acc:3275] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 11:7991797..8023409(+) |
>ENSG00000175390
ATGGCCACACCGGCGGTACCAGTAAGTGCTCCTCCGGCCACGCCAACCCCAGTCCCGGCGGCGGCCCCAGCCTCAGTTCC
AGCGCCAACGCCAGCACCGGCTGCGGCTCCGGTTCCCGCTGCGGCTCCAGCCTCATCCTCAGACCCTGCGGCAGCAGCGG
CTGCAACTGCGGCTCCTGGCCAGACCCCGGCCTCAGCGCAAGCTCCAGCGCAGACCCCAGCGCCCGCTCTGCCTGGTCCT
GCTCTTCCAGGGCCCTTCCCCGGCGGCCGCGTGGTCAGGCTGCACCCAGTCATTTTGGCCTCCATTGTGGACAGCTACGA
GAGACGCAACGAGGGTGCTGCCCGAGTTATCGGGACCCTGTTGGGAACTGTCGACAAACACTCAGTGGAGGTCACCAATT
GCTTTTCAGTGCCGCACAATGAGTCAGAAGATGAAGTGGCTGTTGACATGGAATTTGCTAAGAATATGTATGAACTGCAT
AAAAAAGTTTCTCCAAATGAGCTCATCCTGGGCTGGTACGCTACGGGCCATGACATCACAGAGCACTCTGTGCTGATCCA
CGAGTACTACAGCCGAGAGGCCCCCAACCCCATCCACCTCACTGTGGACACAAGTCTCCAGAACGGCCGCATGAGCATCA
AAGCCTACGTCAGCACTTTAATGGGAGTCCCTGGGAGGACCATGGGAGTGATGTTCACGCCTCTGACAGTGAAATACGCG
TACTACGACACTGAACGCATCGGAGTTGACCTGATCATGAAGACCTGCTTTAGCCCCAACAGAGTGATTGGACTCTCAAG
TGACTTGCAGCAAGTAGGAGGGGCATCAGCTCGCATCCAGGATGCCCTGAGTACAGTGTTGCAATATGCAGAGGATGTAC
TGTCTGGAAAGGTGTCAGCTGACAATACTGTGGGCCGCTTCCTGATGAGCCTGGTTAACCAAGTACCGAAAATAGTTCCC
GATGACTTTGAGACCATGCTCAACAGCAACATCAATGACCTTTTGATGGTGACCTACCTGGCCAACCTCACACAGTCACA
GATTGCACTCAATGAAAAACTTGTAAACCTGTGA
ATGGCCACACCGGCGGTACCAGTAAGTGCTCCTCCGGCCACGCCAACCCCAGTCCCGGCGGCGGCCCCAGCCTCAGTTCC
AGCGCCAACGCCAGCACCGGCTGCGGCTCCGGTTCCCGCTGCGGCTCCAGCCTCATCCTCAGACCCTGCGGCAGCAGCGG
CTGCAACTGCGGCTCCTGGCCAGACCCCGGCCTCAGCGCAAGCTCCAGCGCAGACCCCAGCGCCCGCTCTGCCTGGTCCT
GCTCTTCCAGGGCCCTTCCCCGGCGGCCGCGTGGTCAGGCTGCACCCAGTCATTTTGGCCTCCATTGTGGACAGCTACGA
GAGACGCAACGAGGGTGCTGCCCGAGTTATCGGGACCCTGTTGGGAACTGTCGACAAACACTCAGTGGAGGTCACCAATT
GCTTTTCAGTGCCGCACAATGAGTCAGAAGATGAAGTGGCTGTTGACATGGAATTTGCTAAGAATATGTATGAACTGCAT
AAAAAAGTTTCTCCAAATGAGCTCATCCTGGGCTGGTACGCTACGGGCCATGACATCACAGAGCACTCTGTGCTGATCCA
CGAGTACTACAGCCGAGAGGCCCCCAACCCCATCCACCTCACTGTGGACACAAGTCTCCAGAACGGCCGCATGAGCATCA
AAGCCTACGTCAGCACTTTAATGGGAGTCCCTGGGAGGACCATGGGAGTGATGTTCACGCCTCTGACAGTGAAATACGCG
TACTACGACACTGAACGCATCGGAGTTGACCTGATCATGAAGACCTGCTTTAGCCCCAACAGAGTGATTGGACTCTCAAG
TGACTTGCAGCAAGTAGGAGGGGCATCAGCTCGCATCCAGGATGCCCTGAGTACAGTGTTGCAATATGCAGAGGATGTAC
TGTCTGGAAAGGTGTCAGCTGACAATACTGTGGGCCGCTTCCTGATGAGCCTGGTTAACCAAGTACCGAAAATAGTTCCC
GATGACTTTGAGACCATGCTCAACAGCAACATCAATGACCTTTTGATGGTGACCTACCTGGCCAACCTCACACAGTCACA
GATTGCACTCAATGAAAAACTTGTAAACCTGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 43 .79 RPM |
| bodymap2_lung | 104 .24 RPM |
| bodymap2_breast | 98 .97 RPM |
| bodymap2_adipose | 123 .58 RPM |
| bodymap2_adrenal | 167 .34 RPM |
| bodymap2_skeletal_muscle | 135 .19 RPM |
| bodymap2_thyroid | 107 .73 RPM |
| bodymap2_prostate | 207 .30 RPM |
| bodymap2_colon | 168 .38 RPM |
| bodymap2_testis | 138 .80 RPM |
| bodymap2_brain | 61 .18 RPM |
| bodymap2_heart | 74 .14 RPM |
| bodymap2_white_blood_cells | 225 .27 RPM |
| bodymap2_lymph_node | 130 .82 RPM |
| bodymap2_ovary | 198 .17 RPM |
| bodymap2_kidney | 83 .03 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000004861 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000011903 | possible_ortholog | 1 retrogene | |
| Echinops telfairi | ENSETEG00000002717 | possible_ortholog | 2 retrogenes | |
| Homo sapiens | ENSG00000103035 | within_species_paralog | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000011702 | ortholog_one2one | 5 retrogenes | |
| Myotis lucifugus | ENSMLUG00000000825 | possible_ortholog | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000003220 | possible_ortholog | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000003326 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_2106 | 96.70 | 96.77 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_2512 | 90.37 | 83.19 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_hsap_4321 | 90.33 | 83.19 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000175390 retrocopies