Parental gene:

MMU.4332, ENSMMUG00000002416

Aliases:None
Description:chloride intracellular channel protein 4 [Source:RefSeq peptide;Acc:NP_001248536]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:1:27389103..27470077(+)


>ENSMMUG00000002416
ATGGCGTTGTCGATGCCGCTGAATGGGCTGAAGGAGGAGGACAAAGAGCCCCTCATCGAGCTCTTCGTCAAGGCTGGCAG
TGATGGTGAAAGCATAGGGAACTGCCCCTTTTCCCAGAGGCTCTTCATGATTCTTTGGCTCAAAGGAGTTGTATTTAGTG
TGACGACTGTTGACCTGAAAAGGAAGCCTGCAGACCTGCAGAACTTGGCTCCCGGGACCCACCCACCATTTATAACTTTC
AACAGTGAAGTCAAAACGGATGTAAATAAGATTGAGGAATTTCTTGAAGAAGTCTTATGCCCTCCCAAGTACTTAAAGCT
TTCACCAAAACACCCAGAATCAAATACTGCTGGAATGGACATCTTTGCCAAATTCTCTGCATATATCAAGAATTCAAGGC
CAGAGGCTAATGAAGCACTGGAGAGGGGTCTCCTGAAAACCCTGCAGAAACTAGATGAATATCTGAATTCTCCTCTCCCT
GATGAAATTGATGAAAATAGTATGGAGGACATTAAGTTTTCTACACGTAAATTTCTGGATGGCAATGAAATGACATTAGC
TGATTGCAACCTGCTGCCCAAACTGCATATTGTCAAGGTGGTGGCCAAAAAATATCGCAACTTTGATATTCCAAAAGACA
TGACCGGCATCTGGAGATACCTAACTAATGCATACAGTAGGGATGAGTTCACCAATACCTGTCCCAGTGATAAGGAGGTT
GAAATAGCATATAGTGATGTAGCCAAAAGACTCACCAAGTAA

Library Parental gene expression (RPM)
SRP007412_brain 52 .55 RPM
SRP007412_brain_prefrontal_cortex 21 .82 RPM
SRP007412_cerebellum 45 .53 RPM
SRP007412_heart 195 .21 RPM
SRP007412_kidney 293 .07 RPM
SRP007412_liver 33 .29 RPM
SRP007412_testis 35 .51 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000007591 ortholog_one2one 10 retrogenes
retro_chof_1284, retro_chof_1401, retro_chof_1446, retro_chof_1654, retro_chof_2177, retro_chof_2673, retro_chof_784, retro_chof_789, retro_chof_808, retro_chof_947,
Callithrix jacchus ENSCJAG00000020833 ortholog_one2one 2 retrogenes
retro_cjac_1713, retro_cjac_461,
Cavia porcellus ENSCPOG00000004010 ortholog_one2one 1 retrogene
retro_cpor_1490,
Homo sapiens ENSG00000169504 ortholog_one2one 2 retrogenes
retro_hsap_4143, retro_hsap_4678,
Gorilla gorilla ENSGGOG00000005586 ortholog_one2one 2 retrogenes
retro_ggor_1579, retro_ggor_2783,
Macropus eugenii ENSMEUG00000008789 ortholog_one2one 1 retrogene
retro_meug_780,
Macaca mulatta ENSMMUG00000029827 within_species_paralog 3 retrogenes
retro_mmul_1269, retro_mmul_290, retro_mmul_902,
Mus musculus ENSMUSG00000037242 ortholog_one2one 2 retrogenes
retro_mmus_2259, retro_mmus_945,
Nomascus leucogenys ENSNLEG00000008997 ortholog_one2one 3 retrogenes
retro_nleu_1457, retro_nleu_1785, retro_nleu_2168,
Otolemur garnettii ENSOGAG00000014620 ortholog_one2one 1 retrogene
retro_ogar_2672,
Pongo abelii ENSPPYG00000001715 ortholog_one2one 3 retrogenes
retro_pabe_219, retro_pabe_3466, retro_pabe_3632,
Pan troglodytes ENSPTRG00000000350 ortholog_one2one 3 retrogenes
retro_ptro_2816, retro_ptro_3107, retro_ptro_396,
Pteropus vampyrus ENSPVAG00000005838 ortholog_one2one 1 retrogene
retro_pvam_812,
Ictidomys tridecemlineatus ENSSTOG00000002184 ortholog_one2many 1 retrogene
retro_itri_52,
Tarsius syrichta ENSTSYG00000008978 ortholog_one2one 1 retrogene
retro_tsyr_252,
Vicugna pacos ENSVPAG00000007699 ortholog_one2one 1 retrogene
retro_vpac_475,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_1183 77.27 59.68
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2. retro_mmul_2488 91.30 100.00
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Download FASTA sequences of all ENSMMUG00000002416 retrocopies