Parental gene: | CLIC4, ENSPPYG00000001715 |
| Aliases: | None |
| Description: | chloride intracellular channel protein 4 [Source:RefSeq peptide;Acc:NP_001124560] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 1:205566664..205663652(-) |
>ENSPPYG00000001715
ATGGCGTTGTCGATGCCTCTGAATGGGCTGAAGGAGGAGGACAAAGAGCCCCTCATCGAGCTCTTCGTCAAGGCTGGCAG
TGATGGTGAAAGCATAGGAAACTGCCCCTTTTCCCAGAGGCTCTTCATGATTCTTTGGCTCAAAGGAGTTGTATTTAGTG
TGACGACTGTTGACCTGAAAAGGAAGCCTGCAGACCTGCAGAACTTGGCTCCCGGGACCCACCCACCATTTATAACTTTC
AACAGTGAAGTCAAAACGGATGTAAATAAGATTGAGGAATTTCTTGAAGAAGTCTTATGCCCTCCCAAGTACTTAAAGCT
TTCACCAAAACACCCAGAATCAAATACTGCTGGAATGGACATCTTTGCCAAATTCTCTGCATATATCAAGAATTCAAGGC
CAGAGGCTAATGAAGCACTGGAGAGGGGTCTCCTGAAAACCCTGCAGAAACTGGATGAATATCTGAATTCTCCTCTCCCT
GATGAAATTGATGAAAATAGTATGGAGGACATAAAGTTTTCTACACGTAAATTTCTGGATGGCGATGAAATGACATTAGC
TGATTGCAACCTGCTGCCCAAACTGCATATTGTCAAGGTGGTGGCCAAAAAATATCGCAACTTTGATATTCCAAAAGAAA
TGACTGGCATCTGGAGATACCTAACTAATGCATACAGTAGGGACGAGTTCACCAATACCTGTCCCAGTGATAAGGAGGTT
GAAATAGCATATAGTGATGTAGCCAAAAGACTCACCAAGTAA
ATGGCGTTGTCGATGCCTCTGAATGGGCTGAAGGAGGAGGACAAAGAGCCCCTCATCGAGCTCTTCGTCAAGGCTGGCAG
TGATGGTGAAAGCATAGGAAACTGCCCCTTTTCCCAGAGGCTCTTCATGATTCTTTGGCTCAAAGGAGTTGTATTTAGTG
TGACGACTGTTGACCTGAAAAGGAAGCCTGCAGACCTGCAGAACTTGGCTCCCGGGACCCACCCACCATTTATAACTTTC
AACAGTGAAGTCAAAACGGATGTAAATAAGATTGAGGAATTTCTTGAAGAAGTCTTATGCCCTCCCAAGTACTTAAAGCT
TTCACCAAAACACCCAGAATCAAATACTGCTGGAATGGACATCTTTGCCAAATTCTCTGCATATATCAAGAATTCAAGGC
CAGAGGCTAATGAAGCACTGGAGAGGGGTCTCCTGAAAACCCTGCAGAAACTGGATGAATATCTGAATTCTCCTCTCCCT
GATGAAATTGATGAAAATAGTATGGAGGACATAAAGTTTTCTACACGTAAATTTCTGGATGGCGATGAAATGACATTAGC
TGATTGCAACCTGCTGCCCAAACTGCATATTGTCAAGGTGGTGGCCAAAAAATATCGCAACTTTGATATTCCAAAAGAAA
TGACTGGCATCTGGAGATACCTAACTAATGCATACAGTAGGGACGAGTTCACCAATACCTGTCCCAGTGATAAGGAGGTT
GAAATAGCATATAGTGATGTAGCCAAAAGACTCACCAAGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 15 .70 RPM |
| SRP007412_cerebellum | 16 .17 RPM |
| SRP007412_heart | 59 .97 RPM |
| SRP007412_kidney | 161 .33 RPM |
| SRP007412_liver | 34 .27 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000007591 | ortholog_one2one | 10 retrogenes | |
| Callithrix jacchus | ENSCJAG00000020833 | ortholog_one2one | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000004010 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000169504 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000005586 | ortholog_one2one | 2 retrogenes | |
| Macropus eugenii | ENSMEUG00000008789 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000002416 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000037242 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000008997 | ortholog_one2one | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000014620 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000016456 | within_species_paralog | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000000350 | ortholog_one2one | 3 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000005838 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000002184 | ortholog_one2many | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000008978 | ortholog_one2one | 1 retrogene | |
| Vicugna pacos | ENSVPAG00000007699 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_219 | 72.73 | 86.17 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_3466 | 91.53 | 69.57 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_3632 | 89.80 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000001715 retrocopies