RetrogeneDB ID: | retro_cpor_1490 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_9:53974918..53975667(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CLIC4 | ||
Ensembl ID: | ENSCPOG00000004010 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.1 % |
Parental protein coverage: | 98.81 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SMPLNGLKEEDKEPLIELFVKAG-SDGESIGNCPFSQRLFMILWLKGVVFSVTTVDLKRKPADLQNLAPG |
S...NGL.EE.KE..IELF.KAG..DGE.IGNCPFS..LFMIL.LKGVV..V.T.DLKRK...LQNLA.G | |
Retrocopy | SILVNGLMEEYKELFIELFFKAG<QDGENIGNCPFS*MLFMILCLKGVVLIVSTMDLKRKATNLQNLASG |
Parental | THPPFITFNNEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSRPEANEALER |
.HP.F.TFNN.V..DV.KIEEFLEEVLC.PKYLK.SPKHP.SNT.G.DIFAKFS.YIKN.RPEANE.LER | |
Retrocopy | IHPLFMTFNNKVRKDVSKIEEFLEEVLCAPKYLKPSPKHPVSNTVGIDIFAKFSGYIKNVRPEANETLER |
Parental | GLLKTLQKLDEYLNSPLPDEIDENSMEDIKFSTRKFLDGNEMTLADCNLLPKLHIVKVVAKKYRNFDIPK |
GLLK.LQKL.EYL.SPLPDEIDENSMEDIKFS..KFLDGNE.TLADCNL...LHIVK.V..KY.N..IPK | |
Retrocopy | GLLKILQKLAEYLYSPLPDEIDENSMEDIKFSKHKFLDGNEITLADCNLVSRLHIVKMVTEKYCNVNIPK |
Parental | GMTGIWRYLTNAYSRDEFTNTCPSDKEVEIAYSDVAKRLTK |
GMTGIWRYLTNA.SR.EFTN.CPSDKEV.I..SDV.KRLT. | |
Retrocopy | GMTGIWRYLTNACSRKEFTNICPSDKEVKIPNSDVIKRLTR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 41 .18 RPM |
SRP017611_kidney | 0 .00 RPM | 104 .16 RPM |
SRP017611_liver | 0 .00 RPM | 34 .91 RPM |
SRP040447_lung | 0 .13 RPM | 90 .92 RPM |
SRP040447_skeletal_muscle | 0 .10 RPM | 20 .69 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000007591 | 10 retrocopies | |
Callithrix jacchus | ENSCJAG00000020833 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000004010 | 1 retrocopy |
retro_cpor_1490 ,
|
Homo sapiens | ENSG00000169504 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000005586 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000008789 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000002416 | 2 retrocopies | |
Mus musculus | ENSMUSG00000037242 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000008997 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000014620 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000001715 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000000350 | 3 retrocopies | |
Pteropus vampyrus | ENSPVAG00000005838 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000002184 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000008978 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000007699 | 1 retrocopy |