Parental gene:

ZCCHC10, ENSMODG00000013827

Aliases:None
Description:zinc finger, CCHC domain containing 10 [Source:HGNC Symbol;Acc:25954]
Organism:Opossum (Monodelphis domestica)
Coordinates:1:308183204..308197650(-)


>ENSMODG00000013827
ATGGCGTCCACCATTGGGAGAAGACCTGCCTGCCTCTCTAGCCGTAGCTATTCCCGTCTCTATGGCCTCCAACGAGTTCT
ATTTCCACCTAGGGGATTCTTCCCAGGATGCATTGCTGTGGTCCCGGTTCTCGCTAAGATGGCGACTCCCATGCACCGAC
TTATCGCCCGGAGGCAGGCGGAAGCAAATAAGCAACATGTGAGATGTCAGAAATGTTTAGAATTTGGACATTGGACATAT
GAATGCACAGGAAAAAGAAAATACTTGCATAGACCTTCAAGAACAGCAGAACTTAAGAAAGCTTTAAAAGAAAAAGAAAA
CAGATTATTATTACAACAAAGCATTGGAGAAACTAATATAGAAAAAAAGTCCAAGAAAAAAAGGTCTAAGAGTGTTACCA
GTTCCAGCAGCAGTAGCAGTGGAAGTTCAGCCAGTGACTCTTCATCAGAGAGTGAAGACTCCTCCACCTCTTCTTCCTCT
GATGATAGTGATACTGAGGAAACCTCTTCTACTTCATCCTCATCACCCTCCTCAACTAGTTCTTCCTCTTCCTCTGATTC
TGAGTCAGATTCCAGCTCTTCCTCCAGCACCAGCTCTAGCACAGATAGCAGCTCTGATGATGAGCCACCAAAGAAGAAGA
AAAAGAAATAG

Library Parental gene expression (RPM)
SRP007412_brain 88 .68 RPM
SRP007412_cerebellum 66 .27 RPM
SRP007412_heart 36 .08 RPM
SRP007412_kidney 39 .50 RPM
SRP007412_liver 53 .87 RPM
SRP007412_testis 76 .02 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000031203 ortholog_one2one 1 retrogene
retro_cfam_643,
Choloepus hoffmanni ENSCHOG00000001420 ortholog_one2one 9 retrogenes
retro_chof_1243, retro_chof_1263, retro_chof_1773, retro_chof_2048, retro_chof_2132, retro_chof_2183, retro_chof_501, retro_chof_790, retro_chof_923,
Dasypus novemcinctus ENSDNOG00000017302 ortholog_one2one 1 retrogene
retro_dnov_257,
Myotis lucifugus ENSMLUG00000011366 ortholog_one2many 4 retrogenes
retro_mluc_172, retro_mluc_2240, retro_mluc_2241, retro_mluc_2574,
Mus musculus ENSMUSG00000018239 ortholog_one2many 1 retrogene
retro_mmus_269,
Otolemur garnettii ENSOGAG00000032171 ortholog_one2one 1 retrogene
retro_ogar_3011,
Pongo abelii ENSPPYG00000015776 ortholog_one2one 1 retrogene
retro_pabe_2395,
Rattus norvegicus ENSRNOG00000006943 ortholog_one2one 3 retrogenes
retro_rnor_2037, retro_rnor_2528, retro_rnor_801,
Sorex araneus ENSSARG00000007221 ortholog_one2one 1 retrogene
retro_sara_639,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mdom_1405 78.45 82.87
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Download FASTA sequences of all ENSMODG00000013827 retrocopies