Parental gene: | Rpl5, ENSMUSG00000058558 |
| Aliases: | Rpl5, U21RNA |
| Description: | ribosomal protein L5 [Source:MGI Symbol;Acc:MGI:102854] |
| Organism: | Mouse (Mus musculus) |
| Coordinates: | 5:107900501..107909005(+) |
>ENSMUSG00000058558
ATGGGGTTTGTGAAAGTTGTCAAGAATAAGGCCTACTTTAAAAGATACCAAGTGAGATTTCGAAGGCGGCGAGAGGGTAA
AACTGACTACTATGCTCGAAAACGATTGGTGATCCAGGACAAGAATAAGTACAACACACCCAAATATAGGATGATAGTTC
GTGTAACTAACAGAGATATCATCTGCCAGATTGCATATGCCCGTATAGAAGGGGATATGATCGTCTGTGCAGCATATGCA
CATGAACTTCCAAAATATGGTGTGAAAGTTGGCCTGACAAATTATGCTGCAGCCTATTGCACTGGCCTGCTGCTGGCCCG
CAGGCTTCTGAATAGGTTTGGCATGGACAAGATCTATGAAGGCCAAGTGGAGGTGAATGGAGGTGAATACAATGTGGAAA
GCATTGACGGTCAGCCTGGTGCCTTCACTTGCTATCTGGATGCAGGTCTTGCCCGAACTACAACTGGCAATAAAGTTTTT
GGGGCCCTGAAGGGAGCTGTGGATGGAGGCTTGTCTATCCCTCATAGTACCAAACGATTCCCTGGTTATGACTCTGAAAG
CAAGGAGTTCAATGCAGAGGTACATCGGAAGCACATCATGGGTCAGAATGTGGCAGACTACATGCGCTACCTAATGGAGG
AAGATGAAGATGCGTATAAGAAACAGTTCTCTCAGTACATCAAGAACAACGTAACTCCAGACATGATGGAGGAGATGTAT
AAGAAAGCTCATGCTGCTATCCGAGAGAATCCAGTCTATGAGAAGAAGCCCAAGAGAGAAGTGAAGAAGAAGAGGTGGAA
TCGTCCCAAAATGTCTCTTGCCCAGAAGAAAGATCGGGTTGCTCAAAAGAAGGCAAGCTTCCTCAGAGCTCAGGAAAGGG
CTGCTGAAAGCTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 46 .80 RPM |
| SRP007412_cerebellum | 34 .26 RPM |
| SRP007412_heart | 57 .28 RPM |
| SRP007412_kidney | 78 .35 RPM |
| SRP007412_liver | 59 .15 RPM |
| SRP007412_testis | 29 .04 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000009878 | ortholog_one2one | 5 retrogenes | |
| Bos taurus | ENSBTAG00000002026 | ortholog_one2many | 2 retrogenes | |
| Equus caballus | ENSECAG00000021065 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000006361 | ortholog_one2one | 3 retrogenes | |
| Monodelphis domestica | ENSMODG00000011635 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000004150 | ortholog_one2one | 6 retrogenes | |
| Ornithorhynchus anatinus | ENSOANG00000004669 | ortholog_one2many | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000010089 | ortholog_one2many | 2 retrogenes | |
| Petromyzon marinus | ENSPMAG00000002040 | ortholog_one2one | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000015117 | ortholog_one2one | 4 retrogenes | |
| Rattus norvegicus | ENSRNOG00000023529 | ortholog_one2many | 6 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000006417 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000006899 | ortholog_one2one | 2 retrogenes | |
| Tupaia belangeri | ENSTBEG00000010560 | ortholog_one2one | 5 retrogenes | |
| Tursiops truncatus | ENSTTRG00000013097 | ortholog_one2one | 5 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmus_297 | 98.32 | 100.00 | Please wait, loading  |
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| 2. | retro_mmus_504 | 61.54 | 60.27 | Please wait, loading |
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| 3. | retro_mmus_911 | 88.20 | 59.93 | Please wait, loading |
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| 4. | retro_mmus_1000 | 83.42 | 66.67 | Please wait, loading |
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| 5. | retro_mmus_1185 | 74.27 | 57.58 | Please wait, loading |
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| 6. | retro_mmus_1338 | 80.38 | 53.20 | Please wait, loading |
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| 7. | retro_mmus_1789 | 94.97 | 100.00 | Please wait, loading |
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| 8. | retro_mmus_1991 | 97.30 | 99.66 | Please wait, loading |
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| 9. | retro_mmus_2577 | 90.17 | 57.91 | Please wait, loading |
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| 10. | retro_mmus_2846 | 91.64 | 100.00 | Please wait, loading |
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| 11. | retro_mmus_3076 | 100.00 | 100.00 | Please wait, loading |
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Download FASTA sequences of all ENSMUSG00000058558 retrocopies