Parental gene:

RPL5, ENSSHAG00000006417

Aliases:None
Description:ribosomal protein L5 [Source:HGNC Symbol;Acc:10360]
Organism:Tasmanian devil (Sarcophilus harrisii)
Coordinates:GL856730.1:228265..236176(-)


>ENSSHAG00000006417
AAGGGGTTTGTTAAAGTCGTTAAGAACAAGGCCTACTTCAAGAGGTACCAGGTGAAGTTCCGGAGAAGGCGAGAGGGAAA
AACGGATTATTATGCGCGGAAACGCCTCGTCATCCAGGACAAGAACAAATACAACACCCCCAAGTACCGCATGATCGTCC
GGGTCACCAACAGAGACATCATCTGCCAGATTGCTTATGCCCGTATAGAAGGGGATATGATTGTCTGTGCCGCTTATGCC
CATGAGTTACCAAAGTATGGTGTGAAGGTTGGCCTGACAAATTATGCTGCCGCTTATTGTACAGGCCTGCTGCTGGCCCG
CAGGCTTCTTAACAGATTTGGCATGGACAAGATCTATGAAGGCCAGGTAGAGGTGACCGGAGATGAATACAATGTGGAAA
GCATTGATGGTCAGCCTGGTGCTTTTACCTGTTACCTGGATGCAGGTCTTGCCAGAACTACCACAGGAAACAAAGTCTTT
GGGGCCCTTAAGGGAGCTGTGGATGGTGGTCTATCTATTCCTCACAGTACTAAACGCTTCCCTGGATATGATTCAGAAAG
CAAAGAATTCAATGCAGAAGTACATCGTAAGCATATTATGGGCCAAAATGTTGCAGATTATATGCGTTATCTCATGGAAG
AAGATGAAGATGCTTACAAAAAACAATTCTCACAGTACATAAAGAACAATATAACTCCTGACATGATGGAGGAGATGTAC
AAGAAAGCTCATGCTGGTATACGGGAAAATCCAGTGTATGAAAAGAAACCCAAGAGGGAAGTCAAAAAGAAAAGATGGAA
CCGCCCCAAAATGTCCCTTGCCCAGAAGAAAGACCGAGTTGCTCAGAAGAAGGCAAGTTTCCTCAGAGCTCAGGAGCGGG
CAGCTGACAGTTAA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009878 ortholog_one2many 5 retrogenes
retro_amel_1200, retro_amel_137, retro_amel_139, retro_amel_1439, retro_amel_1669,
Bos taurus ENSBTAG00000002026 ortholog_one2many 2 retrogenes
retro_btau_120, retro_btau_67,
Canis familiaris ENSCAFG00000020150 ortholog_one2one 4 retrogenes
retro_cfam_1505, retro_cfam_1696, retro_cfam_905, retro_cfam_906,
Cavia porcellus ENSCPOG00000000698 ortholog_one2many 8 retrogenes
retro_cpor_1047, retro_cpor_1097, retro_cpor_1141, retro_cpor_1259, retro_cpor_1354, retro_cpor_1387, retro_cpor_428, retro_cpor_737,
Dipodomys ordii ENSDORG00000005674 ortholog_one2one 2 retrogenes
retro_dord_226, retro_dord_670,
Equus caballus ENSECAG00000021065 ortholog_one2many 1 retrogene
retro_ecab_654,
Erinaceus europaeus ENSEEUG00000002852 ortholog_one2many 1 retrogene
retro_eeur_620,
Echinops telfairi ENSETEG00000009889 ortholog_one2many 8 retrogenes
retro_etel_1044, retro_etel_1089, retro_etel_1103, retro_etel_1264, retro_etel_2028, retro_etel_64, retro_etel_785, retro_etel_814,
Felis catus ENSFCAG00000024680 ortholog_one2one 5 retrogenes
retro_fcat_281, retro_fcat_304, retro_fcat_453, retro_fcat_458, retro_fcat_463,
Homo sapiens ENSG00000122406 ortholog_one2one 30 retrogenes
retro_hsap_1266, retro_hsap_138, retro_hsap_1469, retro_hsap_1539, retro_hsap_1588, retro_hsap_1767, retro_hsap_183, retro_hsap_1989, retro_hsap_2143, retro_hsap_2385, retro_hsap_2594, retro_hsap_2600, retro_hsap_2777, retro_hsap_2962, retro_hsap_3105, retro_hsap_3178, retro_hsap_3181, retro_hsap_3209, retro_hsap_3430, retro_hsap_3520, retro_hsap_3941, retro_hsap_4048, retro_hsap_4104, retro_hsap_486, retro_hsap_590, retro_hsap_632, retro_hsap_646, retro_hsap_742, retro_hsap_780, retro_hsap_827,
Gorilla gorilla ENSGGOG00000002699 ortholog_one2many 24 retrogenes
retro_ggor_1129, retro_ggor_1172, retro_ggor_1206, retro_ggor_1342, retro_ggor_1343, retro_ggor_1656, retro_ggor_1934, retro_ggor_2052, retro_ggor_2130, retro_ggor_2178, retro_ggor_2243, retro_ggor_2318, retro_ggor_233, retro_ggor_2380, retro_ggor_264, retro_ggor_2649, retro_ggor_2715, retro_ggor_2755, retro_ggor_457, retro_ggor_521, retro_ggor_553, retro_ggor_622, retro_ggor_647, retro_ggor_996,
Loxodonta africana ENSLAFG00000011916 ortholog_one2many 6 retrogenes
retro_lafr_1025, retro_lafr_1098, retro_lafr_302, retro_lafr_988, retro_lafr_989, retro_lafr_992,
Macropus eugenii ENSMEUG00000006361 ortholog_one2one 3 retrogenes
retro_meug_1168, retro_meug_1537, retro_meug_2146,
Myotis lucifugus ENSMLUG00000008956 ortholog_one2many 1 retrogene
retro_mluc_925,
Monodelphis domestica ENSMODG00000011635 ortholog_one2one 1 retrogene
retro_mdom_748,
Mustela putorius furo ENSMPUG00000004150 ortholog_one2many 6 retrogenes
retro_mputfur_213, retro_mputfur_449, retro_mputfur_451, retro_mputfur_597, retro_mputfur_721, retro_mputfur_833,
Mus musculus ENSMUSG00000058558 ortholog_one2one 11 retrogenes
retro_mmus_1000, retro_mmus_1185, retro_mmus_1338, retro_mmus_1789, retro_mmus_1991, retro_mmus_2577, retro_mmus_2846, retro_mmus_297, retro_mmus_3076, retro_mmus_504, retro_mmus_911,
Nomascus leucogenys ENSNLEG00000010500 ortholog_one2many 2 retrogenes
retro_nleu_2102, retro_nleu_39,
Ornithorhynchus anatinus ENSOANG00000004669 ortholog_one2many 1 retrogene
retro_oana_97,
Oryctolagus cuniculus ENSOCUG00000010089 ortholog_one2many 2 retrogenes
retro_ocun_265, retro_ocun_54,
Otolemur garnettii ENSOGAG00000013246 ortholog_one2many 6 retrogenes
retro_ogar_1164, retro_ogar_134, retro_ogar_1627, retro_ogar_2374, retro_ogar_2633, retro_ogar_707,
Procavia capensis ENSPCAG00000011865 ortholog_one2one 2 retrogenes
retro_pcap_159, retro_pcap_201,
Petromyzon marinus ENSPMAG00000002040 ortholog_one2one 1 retrogene
retro_pmar_23,
Pongo abelii ENSPPYG00000001152 ortholog_one2many 32 retrogenes
retro_pabe_1053, retro_pabe_1219, retro_pabe_1274, retro_pabe_1307, retro_pabe_1331, retro_pabe_1501, retro_pabe_1918, retro_pabe_1931, retro_pabe_2019, retro_pabe_2123, retro_pabe_2238, retro_pabe_2457, retro_pabe_246, retro_pabe_247, retro_pabe_2640, retro_pabe_2641, retro_pabe_2658, retro_pabe_2813, retro_pabe_2841, retro_pabe_2909, retro_pabe_3247, retro_pabe_3320, retro_pabe_3360, retro_pabe_3534, retro_pabe_446, retro_pabe_447, retro_pabe_480, retro_pabe_51, retro_pabe_562, retro_pabe_572, retro_pabe_637, retro_pabe_740,
Pan troglodytes ENSPTRG00000000963 ortholog_one2one 30 retrogenes
retro_ptro_1038, retro_ptro_1068, retro_ptro_1184, retro_ptro_1326, retro_ptro_139, retro_ptro_1519, retro_ptro_1524, retro_ptro_1568, retro_ptro_169, retro_ptro_1744, retro_ptro_1878, retro_ptro_2005, retro_ptro_2241, retro_ptro_2262, retro_ptro_2264, retro_ptro_2329, retro_ptro_2391, retro_ptro_2674, retro_ptro_2742, retro_ptro_2785, retro_ptro_2941, retro_ptro_3027, retro_ptro_366, retro_ptro_433, retro_ptro_460, retro_ptro_470, retro_ptro_528, retro_ptro_577, retro_ptro_866, retro_ptro_997,
Pteropus vampyrus ENSPVAG00000015117 ortholog_one2one 4 retrogenes
retro_pvam_1427, retro_pvam_355, retro_pvam_505, retro_pvam_527,
Rattus norvegicus ENSRNOG00000023529 ortholog_one2many 6 retrogenes
retro_rnor_113, retro_rnor_2246, retro_rnor_2418, retro_rnor_2498, retro_rnor_2802, retro_rnor_2922,
Sus scrofa ENSSSCG00000006899 ortholog_one2many 2 retrogenes
retro_sscr_149, retro_sscr_219,
Ictidomys tridecemlineatus ENSSTOG00000010256 ortholog_one2many 2 retrogenes
retro_itri_1195, retro_itri_721,
Tupaia belangeri ENSTBEG00000010560 ortholog_one2many 5 retrogenes
retro_tbel_101, retro_tbel_1054, retro_tbel_1518, retro_tbel_3006, retro_tbel_3530,
Tarsius syrichta ENSTSYG00000014038 ortholog_one2one 8 retrogenes
retro_tsyr_1462, retro_tsyr_1548, retro_tsyr_206, retro_tsyr_248, retro_tsyr_670, retro_tsyr_737, retro_tsyr_786, retro_tsyr_952,
Tursiops truncatus ENSTTRG00000013097 ortholog_one2one 5 retrogenes
retro_ttru_1446, retro_ttru_1548, retro_ttru_1796, retro_ttru_645, retro_ttru_979,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_shar_202 68.44 80.47
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Download FASTA sequences of all ENSSHAG00000006417 retrocopies