RetrogeneDB ID: | retro_meug_1168 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold312927:910..1506(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL5 | ||
Ensembl ID: | ENSMEUG00000006361 | ||
Aliases: | None | ||
Description: | ribosomal protein L5 [Source:HGNC Symbol;Acc:10360] |
Percent Identity: | 55.88 % |
Parental protein coverage: | 67. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 5 |
Parental | VKFRRRREGKT-DYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKY |
VKF..R...K..D.Y..K.L.I.D.NKYNT.KY..IV..T.R.IICQIA.A.IEG.M.V..AYAHELPKY | |
Retrocopy | VKFQGRIKEKA>DHYVWKCLLI*DTNKYNTMKYSIIVLFTKREIICQIAFAHIEGNMTVYTAYAHELPKY |
Parental | GVKVGLTN-YAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTC-YLDARLARTT |
..K.GL.N.Y......GLLLA.R.L.R..MDKIYE..VEVT.D.YNV.SI..QP..FTC.YLDA...R.. | |
Retrocopy | SMKAGLQN<YSLVCHIGLLLAHRFLDRLDMDKIYEF*VEVTEDKYNVDSIYDQPTSFTC>YLDACVYRYI |
Parental | TGNKVFGALTGAVDGG-LSIPHSTKRFPGYDSESKEFNAEVHR-KHIMGQNVADYMRYLMEEDE |
TGN.......G.V....L.I.H.TK.F.GY.S.SKEF.A..H.....MGQN.A.Y..YLMEE.E | |
Retrocopy | TGNNIWEFFMGTVEDS<LFISHITKYFSGYSSGSKEFKAKIHH<QYTMGQNGARYV*YLMEENE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |