Parental gene:

PSMB5, ENSOCUG00000013109

Aliases:None
Description:proteasome (prosome, macropain) subunit, beta type, 5 [Source:HGNC Symbol;Acc:9542]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:17:43253956..43262142(-)


>ENSOCUG00000013109
TTAGTAGACATGGCGCTGGCCAGCGTGTTGGAGACGCCGTTACCTGTGAACCAGCGCGGGTTTTTCGGACTCGGGGGTCG
TACGGATCTGCTGGATTTGGGTCCAGGGAGTCCCAGTGATGGGCTGAGCCTGACCGCGCCCGGCTGGGGCGTCCCAGAGG
AGCCGGGAATCGAAATGCTTCATGGAACCACCACCCTGGCCTTCAAGTTTCGCCATGGCGTCATCGTTGCGGCTGACTCC
CGGGCTACAGCAGGTGCATATATCGCCTCGCAGACGGTAAAGAAAGTCATAGAGATCAACCCCTACCTGCTGGGCACCAT
GGCTGGGGGCGCAGCAGACTGCAGCTTCTGGGAGCGCCTGCTGGCCCGGCAGTGTCGGATCTATGAGCTTCGTAACAAGG
AGCGCATCTCAGTGGCAGCTGCCTCCAAGCTGCTGGCCAACATGGTCTACCAGTACAAAGGCATGGGGCTGTCCATGGGC
ACCATGATCTGCGGCTGGGATAAGCGGGGCCCGGGCCTCTACTACGTGGACAGTGAAGGGAACCGAATCTCTGGAGCCAC
CTTCTCTGTAGGTTCGGGCTCTGTGTATGCTTATGGCGTCATGGATCGAGGCTATTCTTACGACCTAGAAGTGGAGCAGG
CCTATGATCTGGCCCGCCGCGCCATCTACCAAGCCACCTACAGAGATGCCTACTCAGGAGGCGCTGTCAACCTCTACCAC
GTGCGGGAGGATGGCTGGATCCGGGTCTCCAGTGACAATGTAGCTGATCTGCACGACAAGTATAGTGGATCCACCCCCTG
A

Library Parental gene expression (RPM)
SRP017611_brain 68 .16 RPM
SRP017611_kidney 63 .85 RPM
SRP017611_liver 30 .68 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000008299 ortholog_one2one 4 retrogenes
retro_cjac_1983, retro_cjac_35, retro_cjac_3888, retro_cjac_4076,
Homo sapiens ENSG00000100804 ortholog_one2one 2 retrogenes
retro_hsap_1634, retro_hsap_95,
Gorilla gorilla ENSGGOG00000026856 ortholog_one2one 2 retrogenes
retro_ggor_1232, retro_ggor_156,
Latimeria chalumnae ENSLACG00000015194 ortholog_one2many 1 retrogene
retro_lcha_3,
Macropus eugenii ENSMEUG00000003572 ortholog_one2one 1 retrogene
retro_meug_28,
Myotis lucifugus ENSMLUG00000014281 ortholog_one2one 1 retrogene
retro_mluc_1428,
Macaca mulatta ENSMMUG00000006007 ortholog_one2one 1 retrogene
retro_mmul_1558,
Mus musculus ENSMUSG00000022193 ortholog_one2one 1 retrogene
retro_mmus_2887,
Nomascus leucogenys ENSNLEG00000014891 ortholog_one2one 2 retrogenes
retro_nleu_1063, retro_nleu_2936,
Pongo abelii ENSPPYG00000005654 ortholog_one2many 1 retrogene
retro_pabe_171,
Sus scrofa ENSSSCG00000002036 ortholog_one2many 1 retrogene
retro_sscr_616,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_176 52.71 76.32
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Download FASTA sequences of all ENSOCUG00000013109 retrocopies