Parental gene:

ENSSSCG00000002036

Aliases:None
Description:Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:F1S9C9]
Organism:Pig (Sus scrofa)
Coordinates:7:81330048..81337082(+)


>ENSSSCG00000002036
ATGGCGCTGGCCAGCGTGTTGGAGAGGCCGCTGGCCGTGAATCGGCGCGGGTTTTTCGGATTTGGGGGTCGTGCGGATCT
GCTGGACCTGGGTCCGGGGAGCCCTGGCGATGGGCTGAGCCTGGTCGCGCCCAGCTGGGGTGTCCCAGAGGAGCCAAGAA
TCGAAATGCTTCACGGTACCACCACTCTGGCCTTCAAGTTTCTCCATGGAGTCATTGTTGCAGCAGACTCCCGGGCCACA
GCAGGTGCCTACATTGCCTCCCAGACAGTAAAGAAAGTGATAGAGATCAACCCGTACCTGCTGGGCACCATGGCTGGGGG
TGCAGCGGATTGCAGCTTCTGGGAGCGGCTCTTGGCTCGGCAGTGTCGAATCTATGAGCTTCGAAACAAGGAACGAATTT
CGGTAGCAGCTGCCTCCAAGCTGCTTGCCAACATGGTGTATCAGTACAAAGGCATGGGGCTGTCCATGGGCACCATGATC
TGTGGCTGGGATAAGAGAGGCCCTGGCCTCTACTACGTGGACAGTGAAGGAAACCGGATCTCAGGGGCCACCTTCTCTGT
AGGTTCTGGCTCTGTGTATGCCTATGGTGTCATGGATCGGGGTTACTCCTATGACCTGGAGGTGGAACAGGCTTATGATC
TGGCCCGTCGAGCCATCTACCAAGCCACCTACAGAGATGCCTACTCAGGAGGCTCGGTCAACCTCTACCATGTCCGGGAG
GATGGCTGGATCCGTGTCTCCAGTGACAATGTAGCTGATCTACACGACAAGTATAGTGAATCTACTCCCTGA

Library Parental gene expression (RPM)
SRP014902_placenta 74 .73 RPM
SRP014902_testis 117 .40 RPM
SRP018288_heart 50 .32 RPM
SRP018288_kidney 83 .04 RPM
SRP018288_liver 59 .17 RPM
SRP018288_lung 38 .29 RPM
SRP018856_adipose 114 .06 RPM
SRP035408_brain 59 .80 RPM
SRP035408_liver 59 .94 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000008299 ortholog_one2many 4 retrogenes
retro_cjac_1983, retro_cjac_35, retro_cjac_3888, retro_cjac_4076,
Homo sapiens ENSG00000100804 ortholog_one2many 2 retrogenes
retro_hsap_1634, retro_hsap_95,
Gorilla gorilla ENSGGOG00000026856 ortholog_one2many 2 retrogenes
retro_ggor_1232, retro_ggor_156,
Latimeria chalumnae ENSLACG00000015194 ortholog_many2many 1 retrogene
retro_lcha_3,
Macropus eugenii ENSMEUG00000003572 ortholog_one2many 1 retrogene
retro_meug_28,
Myotis lucifugus ENSMLUG00000014281 ortholog_one2many 1 retrogene
retro_mluc_1428,
Macaca mulatta ENSMMUG00000006007 ortholog_one2many 1 retrogene
retro_mmul_1558,
Mus musculus ENSMUSG00000022193 ortholog_one2many 1 retrogene
retro_mmus_2887,
Nomascus leucogenys ENSNLEG00000014891 ortholog_one2many 2 retrogenes
retro_nleu_1063, retro_nleu_2936,
Oryctolagus cuniculus ENSOCUG00000013109 ortholog_one2many 1 retrogene
retro_ocun_176,
Pongo abelii ENSPPYG00000005654 ortholog_many2many 1 retrogene
retro_pabe_171,
Sus scrofa ENSSSCG00000026951 within_species_paralog 1 retrogene
retro_sscr_90,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_616 71.65 99.24
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Download FASTA sequences of all ENSSSCG00000002036 retrocopies