Parental gene:

PDZD11, ENSOCUG00000017101

Aliases:None
Description:PDZ domain containing 11 [Source:HGNC Symbol;Acc:28034]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:X:48845419..48849905(-)


>ENSOCUG00000017101
ATGGACAGCCGGATTCCTTACGATGACTACCCAGTGGTTTTTCTGCCTGCCTATGAGAATCCCCCAGCGTGGATTCCACC
TCATGAGAGAGTATACCACCCAGACTACAACAATGAGCTGACCCAGTTTCTGCCCCGAGTCGTCACACTGAAGAAGCCTC
CTGGAGCTCAGTTGGGATTTAACATCCGAGGAGGAAAGGCCTCACAGCTAGGCATCTTCATCTCCAAGGTGATTCCTGAC
TCTGATGCGCACCGGGCAGGACTTCAGGAAGGCGACCAAGTACTAGCTGTGAATGATGTGGATTTCCAGGATATTGAGCA
CAGCAAGGCTGTGGAGATACTGAAGACAGCCCGTGAAATCAGCATGCGTGTCCGCTTCTTTCCGTATAATTATCATCGCC
AAAAAGAGAGGACTGTGCACTAG

Library Parental gene expression (RPM)
SRP017611_brain 37 .58 RPM
SRP017611_kidney 38 .92 RPM
SRP017611_liver 8 .94 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009203 possible_ortholog 1 retrogene
retro_amel_158,
Bos taurus ENSBTAG00000012860 ortholog_one2one 1 retrogene
retro_btau_594,
Callithrix jacchus ENSCJAG00000012432 ortholog_one2many 1 retrogene
retro_cjac_138,
Cavia porcellus ENSCPOG00000000210 ortholog_one2one 1 retrogene
retro_cpor_143,
Echinops telfairi ENSETEG00000008626 ortholog_one2one 3 retrogenes
retro_etel_1026, retro_etel_1863, retro_etel_921,
Felis catus ENSFCAG00000008633 ortholog_one2one 3 retrogenes
retro_fcat_1356, retro_fcat_1410, retro_fcat_263,
Homo sapiens ENSG00000120509 ortholog_one2one 1 retrogene
retro_hsap_1439,
Gorilla gorilla ENSGGOG00000006626 ortholog_one2one 1 retrogene
retro_ggor_1108,
Macropus eugenii ENSMEUG00000012040 ortholog_one2one 1 retrogene
retro_meug_1858,
Macaca mulatta ENSMMUG00000013938 ortholog_one2one 1 retrogene
retro_mmul_2265,
Nomascus leucogenys ENSNLEG00000000863 ortholog_one2one 1 retrogene
retro_nleu_1414,
Ochotona princeps ENSOPRG00000001811 ortholog_one2one 1 retrogene
retro_opri_374,
Pongo abelii ENSPPYG00000020929 ortholog_one2one 1 retrogene
retro_pabe_1193,
Pan troglodytes ENSPTRG00000021995 ortholog_one2one 1 retrogene
retro_ptro_981,
Rattus norvegicus ENSRNOG00000002838 ortholog_one2one 1 retrogene
retro_rnor_615,
Sarcophilus harrisii ENSSHAG00000005380 ortholog_one2one 1 retrogene
retro_shar_149,
Ictidomys tridecemlineatus ENSSTOG00000027107 ortholog_one2one 2 retrogenes
retro_itri_1264, retro_itri_1702,
Tursiops truncatus ENSTTRG00000007864 ortholog_one2one 1 retrogene
retro_ttru_953,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_1208 79.83 83.57
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2. retro_ocun_1945 74.80 86.43
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Download FASTA sequences of all ENSOCUG00000017101 retrocopies