RetrogeneDB ID: | retro_fcat_1356 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C2:89633553..89633772(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PDZD11 | ||
Ensembl ID: | ENSFCAG00000008633 | ||
Aliases: | None | ||
Description: | PDZ domain containing 11 [Source:HGNC Symbol;Acc:28034] |
Percent Identity: | 81.33 % |
Parental protein coverage: | 53.57 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | TQFLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKA |
TQFLP..VTLKKP.GAQL.FNI.GGKASQLGIFISKVIPDSDAH.A..QEGDQ..AVN.VDFQDIEH... | |
Retrocopy | TQFLPGTVTLKKPTGAQLAFNIQGGKASQLGIFISKVIPDSDAHQARFQEGDQIVAVNYVDFQDIEHN-- |
Parental | VEILK |
VEILK | |
Retrocopy | VEILK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 17 .90 RPM |
SRP017611_kidney | 0 .00 RPM | 11 .03 RPM |
SRP017611_liver | 0 .00 RPM | 6 .47 RPM |