RetrogeneDB ID: | retro_opri_374 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_10340:19337..19638(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PDZD11 | ||
Ensembl ID: | ENSOPRG00000001811 | ||
Aliases: | None | ||
Description: | PDZ domain containing 11 [Source:HGNC Symbol;Acc:28034] |
Percent Identity: | 87.13 % |
Parental protein coverage: | 83.76 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | WIPPHERVYHPDYNNELTQFLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQ |
W.PPHERVYHPDYNNELTQFLP.IVTLKKPPGAQLGFN..GGKASQL.IFISKVIPDSDA.RAGLQEGDQ | |
Retrocopy | WVPPHERVYHPDYNNELTQFLPQIVTLKKPPGAQLGFNSHGGKASQLDIFISKVIPDSDARRAGLQEGDQ |
Parental | VLAVNDVDFQDIE-HSKAVEILKT--AREIS |
VLAVNDVD.Q.IE..SKAVE.LKT..AREIS | |
Retrocopy | VLAVNDVDSQEIE>NSKAVETLKTAPAREIS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000009203 | 1 retrocopy | |
Bos taurus | ENSBTAG00000012860 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000012432 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000000210 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008626 | 3 retrocopies | |
Felis catus | ENSFCAG00000008633 | 3 retrocopies | |
Homo sapiens | ENSG00000120509 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000006626 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000012040 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000013938 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000863 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000017101 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000001811 | 1 retrocopy |
retro_opri_374 ,
|
Pongo abelii | ENSPPYG00000020929 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000021995 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000002838 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000005380 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000027107 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000007864 | 1 retrocopy |