Parental gene: | PCBP1, ENSOPRG00000004680 |
| Aliases: | None |
| Description: | poly(rC) binding protein 1 [Source:HGNC Symbol;Acc:8647] |
| Organism: | Southern American pika (Ochotona princeps) |
| Coordinates: | GeneScaffold_2189:44281..62367(+) |
>ENSOPRG00000004680
ATGGACACCGGTGTGATTGAAGGTGGATTAAATGTCACTCTCACTATTCGGCTACTTATGCATGGCAAGGAAGTTGGCAG
TATTATTGGAAAGAAAGGAGAATCTGTTAAGAAGATGCGCGAGGAGAGCGGTGCACGGATCAACATCTCAGAGGGGAATT
GTCCTGAGAGAATTATCACTTTGGCTGGACCCACTAATGCCATCTTCAAAGCCTTTGCTATGATCATTGACAAACTGGAA
GAGGACATCAGCAGCTCTATGACCAACAGCACAGCTGCCAGCAGACCTCCAGTTACCCTGAGGCTTGTGGTTCCTGCGAG
TCAGTGTGGCTCTCTCATTGGAAAGGGTGGTTGCAAGATCAAGGAAATACGAGAGAGTACAGGGGCTCAGGTGCAGGTGG
CAGGGGACATGCTCCCCAACTCAACCGAGCGCGCCATCACTATTGCTGGCATTCCTCAGTCGATCATTGAGTGTGTTAAA
CAGATCTGCGTGGTCATGTTGGAGACTCTCTCCCAGTCCCCCCCGAAGGGCGTGACCATCCCGTACCGGCCCAAGCCGTC
CAGTTCTCCGGTCATCTTTGCAGGTGGTCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
CATTGAATCCAGCTCTCCAGAGGTGAAAGGCTATTGGGCAGGTCTGGATGCATCTGCTCAGACTACTTCTCATGAACTCA
CCATTCCAAATGATCTGATTGGCTGCATTATTGGGCGTCAAGGCGCCAAAATCAATGAGATCCGTCAGATGTCTGGGGCG
CAGATCAAAATTGCGAACCCAGTAGAAGGATCTACTGACAGGCAGGTTACCATCACCGGATCTGCTGCCAGCATTAGCCT
GGCTCAGTATCTAATCAATGTCAGGCTTTCCTCGGAGACGGGTGGCATGGGGAGCAGCTAG
ATGGACACCGGTGTGATTGAAGGTGGATTAAATGTCACTCTCACTATTCGGCTACTTATGCATGGCAAGGAAGTTGGCAG
TATTATTGGAAAGAAAGGAGAATCTGTTAAGAAGATGCGCGAGGAGAGCGGTGCACGGATCAACATCTCAGAGGGGAATT
GTCCTGAGAGAATTATCACTTTGGCTGGACCCACTAATGCCATCTTCAAAGCCTTTGCTATGATCATTGACAAACTGGAA
GAGGACATCAGCAGCTCTATGACCAACAGCACAGCTGCCAGCAGACCTCCAGTTACCCTGAGGCTTGTGGTTCCTGCGAG
TCAGTGTGGCTCTCTCATTGGAAAGGGTGGTTGCAAGATCAAGGAAATACGAGAGAGTACAGGGGCTCAGGTGCAGGTGG
CAGGGGACATGCTCCCCAACTCAACCGAGCGCGCCATCACTATTGCTGGCATTCCTCAGTCGATCATTGAGTGTGTTAAA
CAGATCTGCGTGGTCATGTTGGAGACTCTCTCCCAGTCCCCCCCGAAGGGCGTGACCATCCCGTACCGGCCCAAGCCGTC
CAGTTCTCCGGTCATCTTTGCAGGTGGTCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
CATTGAATCCAGCTCTCCAGAGGTGAAAGGCTATTGGGCAGGTCTGGATGCATCTGCTCAGACTACTTCTCATGAACTCA
CCATTCCAAATGATCTGATTGGCTGCATTATTGGGCGTCAAGGCGCCAAAATCAATGAGATCCGTCAGATGTCTGGGGCG
CAGATCAAAATTGCGAACCCAGTAGAAGGATCTACTGACAGGCAGGTTACCATCACCGGATCTGCTGCCAGCATTAGCCT
GGCTCAGTATCTAATCAATGTCAGGCTTTCCTCGGAGACGGGTGGCATGGGGAGCAGCTAG
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Cavia porcellus | ENSCPOG00000000967 | possible_ortholog | 2 retrogenes | |
| Equus caballus | ENSECAG00000022389 | possible_ortholog | 1 retrogene | |
| Homo sapiens | ENSG00000197111 | possible_ortholog | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000011651 | possible_ortholog | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000006608 | possible_ortholog | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000022490 | possible_ortholog | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_opri_284 | 83.42 | 53.83 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_opri_313 | 94.95 | 53.83 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_opri_742 | 94.42 | 53.83 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_opri_789 | 94.95 | 53.83 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_opri_1126 | 83.42 | 53.83 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSOPRG00000004680 retrocopies