RetrogeneDB ID: | retro_mmul_1263 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 16:54608443..54609288(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PCBP2 | ||
Ensembl ID: | ENSMMUG00000006608 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.87 % |
Parental protein coverage: | 74.73 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | KVQLPRTLLDMDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT |
KVQ.PRTLLDMDTGVIE.GLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREE.GARINISEGNCPERIIT | |
Retrocopy | KVQHPRTLLDMDTGVIEDGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREERGARINISEGNCPERIIT |
Parental | LAGPTNAIFKAFAMIIDKLEEIIXSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQ |
LAGPTNAIFKAFAMIIDKLEE.I.SSMTNSTAASRPPVTLRL.VPASQ..SLIGKGGCKIKEI.ESTGAQ | |
Retrocopy | LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLMVPASQ*ASLIGKGGCKIKEI*ESTGAQ |
Parental | VQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQVRKFLLM |
VQVAGDMLPN.TE.AITIAGIPQSIIECVKQICVVMLESPPKGVTI.YRPK.SSSPVIFAGGQ.R..... | |
Retrocopy | VQVAGDMLPN*TEQAITIAGIPQSIIECVKQICVVMLESPPKGVTILYRPKLSSSPVIFAGGQDRYSTGS |
Parental | VSTSLPVPTPSMFYTPLVDGPPLQAYTIQGQYAIPQPDLTKLHQLAMQQSH---FP-MTHGNTGFS-GIE |
.S.S.P..TPSM...P...GPPL.AY.IQGQYAIPQPDLTKLHQLAMQQSH...FP.MTHGNTGFS.G.E | |
Retrocopy | NSASFPHTTPSMCVNPDLEGPPLEAYSIQGQYAIPQPDLTKLHQLAMQQSHCLIFP<MTHGNTGFSAGLE |
Parental | SSS |
.S. | |
Retrocopy | ASA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 5 .49 RPM | 109 .59 RPM |
SRP007412_brain_prefrontal_cortex | 11 .26 RPM | 151 .28 RPM |
SRP007412_cerebellum | 7 .36 RPM | 156 .72 RPM |
SRP007412_heart | 4 .83 RPM | 108 .00 RPM |
SRP007412_kidney | 6 .92 RPM | 185 .68 RPM |
SRP007412_liver | 22 .29 RPM | 268 .26 RPM |
SRP007412_testis | 13 .08 RPM | 275 .92 RPM |