Parental gene:

PCBP2, ENSG00000197111

Aliases:PCBP2, HNRNPE2, HNRPE2, hnRNP-E2
Description:poly(rC) binding protein 2 [Source:HGNC Symbol;Acc:8648]
Organism:Human (Homo sapiens)
Coordinates:12:53835524..53874946(+)


>ENSG00000197111
ATGGACACCGGTGTGATTGAAGGTGGATTAAATGTCACTCTCACCATCCGGCTACTTATGCATGGAAAGGAAGTTGGCAG
TATCATCGGAAAGAAAGGAGAATCAGTTAAGAAGATGCGCGAGGAGAGTGGTGCACGTATCAACATCTCAGAAGGGAATT
GTCCTGAGAGAATTATCACTTTGGCTGGACCCACTAATGCCATCTTCAAAGCCTTTGCTATGATCATTGACAAACTGGAA
GAGGACATAAGCAGCTCTATGACCAATAGCACAGCTGCCAGTAGACCCCCGGTCACCCTGAGGCTGGTGGTCCCTGCTAG
TCAGTGTGGCTCTCTCATTGGAAAAGGTGGATGCAAGATCAAGGAAATACGAGAGAGTACAGGGGCTCAGGTCCAGGTGG
CAGGGGATATGCTACCCAACTCAACTGAGCGGGCCATCACTATTGCTGGCATTCCACAATCCATCATTGAGTGTGTCAAA
CAGATCTGCGTGGTCATGTTGGAGACTCTCTCCCAGTCCCCCCCGAAGGGCGTGACCATCCCGTACCGGCCCAAGCCGTC
CAGCTCTCCGGTCATCTTTGCAGGTGGTCAGGACAGGTACAGCACAGGCAGCGACAGTGCGAGCTTTCCCCACACCACCC
CGTCCATGTGCCTCAACCCTGACCTGGAGGGACCACCTCTAGAGGCCTATACCATTCAAGGACAGTATGCCATTCCACAG
CCAGATTTGACCAAGCTGCACCAGTTGGCAATGCAACAGTCTCATTTTCCCATGACGCATGGCAACACCGGATTCAGTGG
CATTGAATCCAGCTCTCCAGAGGTGAAAGGCTATTGGGCAGGTTTGGATGCATCTGCTCAGACTACTTCTCATGAACTCA
CCATTCCAAACGATTTGATTGGCTGCATAATCGGGCGTCAAGGCGCCAAAATCAATGAGATCCGTCAGATGTCTGGGGCG
CAGATCAAAATTGCGAACCCAGTGGAAGGATCTACTGATAGGCAGGTTACCATCACTGGATCTGCTGCCAGCATTAGCCT
GGCTCAATATCTAATCAATGTCAGGCTTTCCTCGGAGACGGGTGGCATGGGGAGCAGCTAG

Library Parental gene expression (RPM)
bodymap2_liver 128 .11 RPM
bodymap2_lung 319 .99 RPM
bodymap2_breast 223 .74 RPM
bodymap2_adipose 289 .44 RPM
bodymap2_adrenal 245 .72 RPM
bodymap2_skeletal_muscle 189 .15 RPM
bodymap2_thyroid 224 .98 RPM
bodymap2_prostate 305 .94 RPM
bodymap2_colon 234 .66 RPM
bodymap2_testis 271 .79 RPM
bodymap2_brain 125 .31 RPM
bodymap2_heart 137 .26 RPM
bodymap2_white_blood_cells 386 .10 RPM
bodymap2_lymph_node 348 .48 RPM
bodymap2_ovary 291 .60 RPM
bodymap2_kidney 281 .96 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000020757 possible_ortholog 1 retrogene
retro_btau_175,
Canis familiaris ENSCAFG00000006821 possible_ortholog 1 retrogene
retro_cfam_54,
Callithrix jacchus ENSCJAG00000018590 possible_ortholog 2 retrogenes
retro_cjac_3253, retro_cjac_754,
Cavia porcellus ENSCPOG00000000967 ortholog_one2one 2 retrogenes
retro_cpor_193, retro_cpor_97,
Dasypus novemcinctus ENSDNOG00000008688 possible_ortholog 6 retrogenes
retro_dnov_1146, retro_dnov_1399, retro_dnov_1672, retro_dnov_1823, retro_dnov_2434, retro_dnov_452,
Equus caballus ENSECAG00000022389 ortholog_one2one 1 retrogene
retro_ecab_67,
Erinaceus europaeus ENSEEUG00000001077 possible_ortholog 2 retrogenes
retro_eeur_218, retro_eeur_655,
Echinops telfairi ENSETEG00000014741 possible_ortholog 3 retrogenes
retro_etel_1170, retro_etel_2108, retro_etel_840,
Homo sapiens ENSG00000165119 other_paralog 3 retrogenes
retro_hsap_2323, retro_hsap_2674, retro_hsap_3385,
Gorilla gorilla ENSGGOG00000012613 possible_ortholog 2 retrogenes
retro_ggor_212, retro_ggor_2734,
Macropus eugenii ENSMEUG00000001887 ortholog_one2one 7 retrogenes
retro_meug_1143, retro_meug_1988, retro_meug_432, retro_meug_526, retro_meug_618, retro_meug_828, retro_meug_964,
Microcebus murinus ENSMICG00000011651 ortholog_one2one 2 retrogenes
retro_mmur_1226, retro_mmur_1228,
Myotis lucifugus ENSMLUG00000009971 possible_ortholog 3 retrogenes
retro_mluc_2199, retro_mluc_314, retro_mluc_571,
Macaca mulatta ENSMMUG00000006608 ortholog_one2one 2 retrogenes
retro_mmul_1263, retro_mmul_1994,
Mus musculus ENSMUSG00000056851 possible_ortholog 1 retrogene
retro_mmus_274,
Nomascus leucogenys ENSNLEG00000017693 possible_ortholog 1 retrogene
retro_nleu_10,
Oryctolagus cuniculus ENSOCUG00000022490 possible_ortholog 3 retrogenes
retro_ocun_10, retro_ocun_1622, retro_ocun_898,
Ochotona princeps ENSOPRG00000004680 possible_ortholog 5 retrogenes
retro_opri_1126, retro_opri_284, retro_opri_313, retro_opri_742, retro_opri_789,
Pongo abelii ENSPPYG00000004581 possible_ortholog 2 retrogenes
retro_pabe_3346, retro_pabe_92,
Pan troglodytes ENSPTRG00000005018 possible_ortholog 1 retrogene
retro_ptro_113,
Pteropus vampyrus ENSPVAG00000012284 possible_ortholog 3 retrogenes
retro_pvam_1168, retro_pvam_1369, retro_pvam_868,
Rattus norvegicus ENSRNOG00000036852 possible_ortholog 2 retrogenes
retro_rnor_1238, retro_rnor_2088,
Sus scrofa ENSSSCG00000000274 possible_ortholog 1 retrogene
retro_sscr_61,
Ictidomys tridecemlineatus ENSSTOG00000003635 possible_ortholog 2 retrogenes
retro_itri_1522, retro_itri_557,
Vicugna pacos ENSVPAG00000000406 possible_ortholog 1 retrogene
retro_vpac_471,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_83 86.45 58.20
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2. retro_hsap_4077 94.03 100.00
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Download FASTA sequences of all ENSG00000197111 retrocopies