RetrogeneDB ID: | retro_ecab_67 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 15:32428650..32429721(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSECAG00000002544 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PCBP2 | ||
Ensembl ID: | ENSECAG00000022389 | ||
Aliases: | None | ||
Description: | poly(rC) binding protein 2 [Source:HGNC Symbol;Acc:8648] |
Percent Identity: | 84.58 % |
Parental protein coverage: | 57.73 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFK |
MD.GV.E.GLNVTLTIRLLMHGKEVGSIIGKKGESVK..REESGARINISEGNCPERIITL.GPTNAIFK | |
Retrocopy | MDAGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFK |
Parental | AFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN |
AFAMIIDKLEEDI.SSMTNSTAASRPPVTLRLVVPA.QCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN | |
Retrocopy | AFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN |
Parental | STERAITIAGIPQSIIECVKQICVVMLES---PPKG--VTIPYRPKPSSSPVIFAGGQDRYSTGSDSASF |
STERAITIAG.PQS..ECVKQIC.VMLE.....P.G...TIPY.P.P.SSPVI.AGGQDR.S...D.A.. | |
Retrocopy | STERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPMPASSPVICAGGQDRCS---DAAGY |
Parental | PHTT |
PH.T | |
Retrocopy | PHAT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 132 .23 RPM | 10 .39 RPM |
SRP021940_cerebellum | 204 .51 RPM | 6 .28 RPM |
SRP021940_embryo | 278 .10 RPM | 406 .66 RPM |
SRP021940_placental_villous | 256 .10 RPM | 244 .16 RPM |
SRP021940_synovial_membrane | 206 .30 RPM | 276 .25 RPM |
SRP021940_testis | 187 .99 RPM | 609 .19 RPM |
Species | RetrogeneDB ID |
---|---|
Bos taurus | retro_btau_175 |
Sus scrofa | retro_sscr_61 |
Pongo abelii | retro_pabe_92 |
Oryctolagus cuniculus | retro_ocun_10 |