RetrogeneDB ID: | retro_ocun_10 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 2:116117550..116118621(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000003634 | |
Aliases: | PCBP1, hnRNP E1 | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000022490 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.18 % |
Parental protein coverage: | 98.34 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFK |
MD.GV.E.GLNVTLTIRLLMHGKEVGSIIGKKGESVK..REESGARINISEGNCPERIITL.GPTNAIFK | |
Retrocopy | MDAGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFK |
Parental | AFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN |
AFAMIIDKLEEDI.SSMTNSTAASRPPVTLRLVVPA.QCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN | |
Retrocopy | AFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN |
Parental | STERAITIAGIPQSIIECVKQICVVMLETLSQSPP-KGVTIPYRPKPSSSPVIFAGGQQTPVCCSPDSQP |
STERAITIAG.PQS..ECVKQIC.VMLETLSQSP.....TIPY.P.P.SSPVI.AGGQ.....CS.D... | |
Retrocopy | STERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPMPASSPVICAGGQDR---CS-DAAG |
Parental | QKHCWHELEQTPTRAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDA |
..H..H.LE..P..AY.IQGQ..I...DL.KL.Q.A.QQSHF.M.HG.TGF.GI.SSSPEVKGYWA.LDA | |
Retrocopy | YPHATHDLEGPPLDAYSIQGQHTISPLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDA |
Parental | SAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINV |
S.QTT.HELTIPN.LIGCIIGRQGA.INEIRQMSGAQIKIANPVEGS..RQVTITGSAASISLAQYLIN. | |
Retrocopy | STQTT-HELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA |
Parental | SRRSNQ |
...S.. | |
Retrocopy | RLSSEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 178 .64 RPM | 82 .67 RPM |
SRP017611_kidney | 241 .33 RPM | 104 .60 RPM |
SRP017611_liver | 105 .21 RPM | 61 .66 RPM |
Species | RetrogeneDB ID |
---|---|
Bos taurus | retro_btau_175 |
Sus scrofa | retro_sscr_61 |
Equus caballus | retro_ecab_67 |
Pongo abelii | retro_pabe_92 |