Parental gene:

CSRP2, ENSPPYG00000004790

Aliases:None
Description:cysteine and glycine-rich protein 2 [Source:HGNC Symbol;Acc:2470]
Organism:Orangutan (Pongo abelii)
Coordinates:12:77343432..77409178(-)


>ENSPPYG00000004790
ATGCCTGTCTGGGGAGGTGGAAACAAGTGTGGGGCCTGTGGGAGGACCGTGTACCACGCAGAAGAGGTGCAGTGTGATGG
CAGGAGCTTCCACCGCTGCTGCTTTCTCTGCATGGTTTGCAGGAAAAATTTAGATAGCACAACAGTGGCAATTCACGATG
AAGAGATCTACTGCAAATCCTGCTACGGAAAGAAGTATGGGCCAAAAGGCTACGGTTACGGCCAGGGCGCTGGCACGCTT
AACATGGACCGTGGCGAGAGGCTGGGCATCAAGCCAGAGAGTGTTCAGCCTCACAGGCCTACAACAAATCCAAACACTTC
TAAATTTGCTCAGAAATATGGAGGTGCTGAGAAGTGTTCCAGATGTGGGGATTCTGTATATGCTGCCGAGAAGATAATTG
GAGCTGGAAAGCCCTGGCACAAAAACTGTTTCCGATGTGCAAAGTGTGGGAAGAGTCTTGAATCAACAACTCTGACTGAA
AAAGAAGGTGAAATCTATTGTAAAGGATGCTATGCAAAGAACTTTGGGCCCAAGGGATTTGGCTATGGCCAAGGAGCAGG
GGCTCTTGTTCATGCCCAGTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 5 .53 RPM
SRP007412_cerebellum 13 .01 RPM
SRP007412_heart 7 .68 RPM
SRP007412_kidney 76 .57 RPM
SRP007412_liver 86 .08 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000019153 ortholog_one2one 6 retrogenes
retro_cjac_1266, retro_cjac_1285, retro_cjac_1384, retro_cjac_1555, retro_cjac_2919, retro_cjac_3150,
Equus caballus ENSECAG00000015606 ortholog_one2one 1 retrogene
retro_ecab_412,
Echinops telfairi ENSETEG00000019648 ortholog_one2one 1 retrogene
retro_etel_1589,
Homo sapiens ENSG00000175183 ortholog_one2one 2 retrogenes
retro_hsap_2833, retro_hsap_2836,
Gorilla gorilla ENSGGOG00000026601 ortholog_one2many 2 retrogenes
retro_ggor_1967, retro_ggor_1969,
Myotis lucifugus ENSMLUG00000002384 ortholog_one2one 3 retrogenes
retro_mluc_1888, retro_mluc_486, retro_mluc_720,
Macaca mulatta ENSMMUG00000018257 ortholog_one2one 1 retrogene
retro_mmul_1474,
Mustela putorius furo ENSMPUG00000017469 ortholog_one2one 1 retrogene
retro_mputfur_262,
Nomascus leucogenys ENSNLEG00000004885 ortholog_one2one 2 retrogenes
retro_nleu_1208, retro_nleu_1592,
Oryctolagus cuniculus ENSOCUG00000008330 ortholog_one2one 2 retrogenes
retro_ocun_1165, retro_ocun_649,
Otolemur garnettii ENSOGAG00000013999 ortholog_one2one 6 retrogenes
retro_ogar_1220, retro_ogar_1411, retro_ogar_1688, retro_ogar_2589, retro_ogar_2909, retro_ogar_3399,
Ochotona princeps ENSOPRG00000011987 ortholog_one2one 1 retrogene
retro_opri_1125,
Pongo abelii ENSPPYG00000006209 within_species_paralog 1 retrogene
retro_pabe_114,
Rattus norvegicus ENSRNOG00000003772 ortholog_one2one 1 retrogene
retro_rnor_1763,
Sorex araneus ENSSARG00000002290 ortholog_one2one 1 retrogene
retro_sara_526,
Ictidomys tridecemlineatus ENSSTOG00000010876 ortholog_one2one 1 retrogene
retro_itri_551,
Tupaia belangeri ENSTBEG00000009767 ortholog_one2one 3 retrogenes
retro_tbel_1866, retro_tbel_4404, retro_tbel_4407,
Tursiops truncatus ENSTTRG00000014596 ortholog_one2one 1 retrogene
retro_ttru_1332,
Drosophila melanogaster FBgn0259209 ortholog_many2many 1 retrogene
retro_dmel_71,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_2199 77.36 80.83
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2. retro_pabe_2347 91.18 51.81
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Download FASTA sequences of all ENSPPYG00000004790 retrocopies