Parental gene: | HOMER2, ENSPPYG00000006735 |
| Aliases: | None |
| Description: | homer homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:17513] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 15:80292593..80394146(-) |
>ENSPPYG00000006735
TGGAGCGGCGCCGGGGCTGAGCCGGGCGCGCCCGGGCCGCCGCATGTGCCGCGCGGGGAGCGGCTGCCGAGCGGGCGGAG
AGCGAGTGCGAGAGGCCCCGTCGGAGCGGCCGCCAGAGCAGCGCCGGAGATGGGAGAACAGCCCATCTTCACCACCCGAG
CGCATGTGTTCCAGATTGACCCCAACACCAAGAAGAACTGGATGCCTGCGAGCAAGCAGGCGGTCACCGTTTCCTACTTC
TATGATGTCACAAGGAACAGCTATCGGATCATCAGTGTGGACGGAGCCAAGGTGATCATAAACAGCACAATCACACCGAA
TATGACCTTCACCAAAACGTCACAGAAGTTTGGGCAGTGGGCCGACAGCAGAGCCAACACGGTGTTTGGTTTGGGGTTTT
CCTCTGAGCAGCAGCTGACAAAGTTTGCAGAGAAATTCCAGGAGGTGAAAGAAGCTGCCAAGATAGCCAAAGACAAGATG
CAGGAGAAAATCGAGACCTCAAGTAATCATTCCCAAGAATCTGGGCGTAAAACCCCATCTTCTACTCAGGCATCCAGTGT
CAATGGGACGGACGATGAAAAGGCCTCTCACGCTGGTCCAGCCAACACACACCTGAAGTCTGAGAATGACAAGCTGAAGA
TTGCGTTGACACAGAGCGCAGCCAACGTGAAGAAGTGGGAGATCGAGCTGCAGACCCTTCGGGAGAGCAATGCCCGGCTC
ACCACAGCACTGCAGGAGTCGGCAGCCAGTGTGGAGCAGTGGAAGAGGCAGTTCTCCATCTGCCGGGATGAGAACGANNN
NNNNNNNTCGAAGATTGATGAGCTGGAAGAACAATGCAGTGAGATCAACAGAGAGAAGGAGAAGAACACGCAGCTGAAGA
GGAGGATCGAGGAGCTGGAGGCAGAGCTCCGAGAAAAGGAGACAGAGCTGAAAGATCTCCGAAAACAAAGTGAAATCATA
CCTCAGCTCATGTCAGAGTGCGAATATGTCTCTGAGAAGCTAGAGGCGGCAGAGAGAGACAATCAAAGCCTGGAAGACAA
AGTGCGTTCCTTAAAGACAGACATTGAGGAGAGCAAATACCGACAGCGCCACCTGAAGGTGGAGTTGAAGAGTTTCCTGG
AGGTGCTGGACGGGAAGATTGACGACCTGCATGACTTCCGCCGAGGCCTCTCCAAGCTGGGCACCGATAAC
TGGAGCGGCGCCGGGGCTGAGCCGGGCGCGCCCGGGCCGCCGCATGTGCCGCGCGGGGAGCGGCTGCCGAGCGGGCGGAG
AGCGAGTGCGAGAGGCCCCGTCGGAGCGGCCGCCAGAGCAGCGCCGGAGATGGGAGAACAGCCCATCTTCACCACCCGAG
CGCATGTGTTCCAGATTGACCCCAACACCAAGAAGAACTGGATGCCTGCGAGCAAGCAGGCGGTCACCGTTTCCTACTTC
TATGATGTCACAAGGAACAGCTATCGGATCATCAGTGTGGACGGAGCCAAGGTGATCATAAACAGCACAATCACACCGAA
TATGACCTTCACCAAAACGTCACAGAAGTTTGGGCAGTGGGCCGACAGCAGAGCCAACACGGTGTTTGGTTTGGGGTTTT
CCTCTGAGCAGCAGCTGACAAAGTTTGCAGAGAAATTCCAGGAGGTGAAAGAAGCTGCCAAGATAGCCAAAGACAAGATG
CAGGAGAAAATCGAGACCTCAAGTAATCATTCCCAAGAATCTGGGCGTAAAACCCCATCTTCTACTCAGGCATCCAGTGT
CAATGGGACGGACGATGAAAAGGCCTCTCACGCTGGTCCAGCCAACACACACCTGAAGTCTGAGAATGACAAGCTGAAGA
TTGCGTTGACACAGAGCGCAGCCAACGTGAAGAAGTGGGAGATCGAGCTGCAGACCCTTCGGGAGAGCAATGCCCGGCTC
ACCACAGCACTGCAGGAGTCGGCAGCCAGTGTGGAGCAGTGGAAGAGGCAGTTCTCCATCTGCCGGGATGAGAACGANNN
NNNNNNNTCGAAGATTGATGAGCTGGAAGAACAATGCAGTGAGATCAACAGAGAGAAGGAGAAGAACACGCAGCTGAAGA
GGAGGATCGAGGAGCTGGAGGCAGAGCTCCGAGAAAAGGAGACAGAGCTGAAAGATCTCCGAAAACAAAGTGAAATCATA
CCTCAGCTCATGTCAGAGTGCGAATATGTCTCTGAGAAGCTAGAGGCGGCAGAGAGAGACAATCAAAGCCTGGAAGACAA
AGTGCGTTCCTTAAAGACAGACATTGAGGAGAGCAAATACCGACAGCGCCACCTGAAGGTGGAGTTGAAGAGTTTCCTGG
AGGTGCTGGACGGGAAGATTGACGACCTGCATGACTTCCGCCGAGGCCTCTCCAAGCTGGGCACCGATAAC
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 7 .74 RPM |
| SRP007412_cerebellum | 9 .12 RPM |
| SRP007412_heart | 5 .24 RPM |
| SRP007412_kidney | 15 .11 RPM |
| SRP007412_liver | 4 .19 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000015884 | ortholog_one2one | 3 retrogenes | |
| Cavia porcellus | ENSCPOG00000014688 | ortholog_one2many | 1 retrogene | |
| Equus caballus | ENSECAG00000023619 | ortholog_one2one | 3 retrogenes | |
| Homo sapiens | ENSG00000103942 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000008297 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000010953 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_1209 | 66.23 | 74.81 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_1210 | 69.07 | 71.79 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_1217 | 76.63 | 64.48 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_pabe_3566 | 72.90 | 64.48 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_pabe_3568 | 74.43 | 64.48 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000006735 retrocopies