RetrogeneDB ID: | retro_nleu_3002 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397565.1:375436..376065(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HOMER2 | ||
Ensembl ID: | ENSNLEG00000010953 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 63.72 % |
Parental protein coverage: | 59.54 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | EQPIFTTRAHVFQIDPNTKKNWMPAS-KQAVTVSYFYDVTRNSYRIISVDGAKLIL--TLLPNMTVMRNQ |
EQPIF.T.A.VFQIDPNT.KNWMPAS..QAVT.S.F.DVTRNS..IISVD........T..PN.T..... | |
Retrocopy | EQPIFITGAQVFQIDPNTEKNWMPAS<QQAVTISCFCDVTRNSCGIISVDSTEVTINNTITPNRTFTDTS |
Parental | MGVGGWAKPLAVAQRYVGEGSWTTLSMFAEKFQEVKEAAKIAKDKTQEKIETSSNHSQ-ESGCETPSSTQ |
...G.WA...A......G..S...L.MFAEKFQEV.EAA.IAKDKTQE..E.SSNH...ESG...PSST. | |
Retrocopy | QPSGHWADSGANTVFGLGFSSEQQLTMFAEKFQEVEEAANIAKDKTQENMEPSSNHPE<ESGRGAPSSTP |
Parental | ASSVNGTDDE-KASHAGPANTHLKSENDKLKIALTQSAANVK-KWEIELQTLRESNARLTTALQESAASV |
ASSVNGTDDE.KAS.A..A.THL.S.N.KLK.A.TQSAA.....WE.ELQT.RES.ARLTTALQESAAS. | |
Retrocopy | ASSVNGTDDE<KASQAAAADTHLQSGNHKLKAASTQSAAHGR<RWEMELQTRRESDARLTTALQESAASA |
Parental | EQWKR |
EQ.KR | |
Retrocopy | EQRKR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000015884 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000014688 | 1 retrocopy | |
Equus caballus | ENSECAG00000023619 | 3 retrocopies | |
Homo sapiens | ENSG00000103942 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000008297 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000010953 | 1 retrocopy |
retro_nleu_3002 ,
|
Pongo abelii | ENSPPYG00000006735 | 5 retrocopies |