RetrogeneDB ID: | retro_mmul_2278 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 7:169435541..169436144(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000017539 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HOMER2 | ||
Ensembl ID: | ENSMMUG00000008297 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.87 % |
Parental protein coverage: | 57.79 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | RAHVFQIDPNTKKNWMPASKQ-AVTVSYFYDVTRNSYRIISVDGAKVIINSTITPNMTFTKTSQKFGQWA |
RA.VF.IDPNTK.NWMPAS...AVTVS..YDVTR.SYRI.SV.GAKVIINSTITPN.TFT..SQK.GQWA | |
Retrocopy | RAQVFPIDPNTK-NWMPASNR<AVTVSCLYDVTRKSYRIVSVNGAKVIINSTITPNTTFTNMSQKSGQWA |
Parental | DSRANTVFGLGFSSEQQLTKFAEKFQEVKEAAKIA-KDKTQEKIETSSDHSQESGRETPSSTQASSVNGT |
DS.ANTVFGLGFSSEQQ.TKFAEKFQEV.EAAKIA.K..T..K...........G....SST.ASSVNG. | |
Retrocopy | DSKANTVFGLGFSSEQQPTKFAEKFQEVEEAAKIA>KTRTRRKWSPRVINPKNPGVD--SSTLASSVNGM |
Parental | DDEKASHTGPANTHLKSENDKLKIALTQSAANVKKWEIELQTLRESNARLTTALQESAASVEQWKR |
DDEKASH...ANTHL...N.KLK.ALTQ.AA..K..E.ELQ..RES.ARL.TALQESAAS.EQ.KR | |
Retrocopy | DDEKASHAAAANTHLQYRNNKLKAALTQGAAHGKRREMELQAWRESDARLPTALQESAASAEQRKR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 10 .98 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 16 .58 RPM |
SRP007412_cerebellum | 0 .00 RPM | 12 .14 RPM |
SRP007412_heart | 0 .00 RPM | 27 .79 RPM |
SRP007412_kidney | 0 .00 RPM | 39 .44 RPM |
SRP007412_liver | 0 .00 RPM | 31 .07 RPM |
SRP007412_testis | 3 .13 RPM | 4 .75 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000015884 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000014688 | 1 retrocopy | |
Equus caballus | ENSECAG00000023619 | 3 retrocopies | |
Homo sapiens | ENSG00000103942 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000008297 | 1 retrocopy |
retro_mmul_2278 ,
|
Nomascus leucogenys | ENSNLEG00000010953 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006735 | 5 retrocopies |