Parental gene:

NIF3L1, ENSPPYG00000013063

Aliases:None
Description:NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae) [Source:HGNC Symbol;Acc:13390]
Organism:Orangutan (Pongo abelii)
Coordinates:2b:92145790..92160840(+)


>ENSPPYG00000013063
ATGTTGTCATCTTGCGTACGCCCAGTCCCCACGACAGTCCGGTTTGTAGATTCCCTTATCTGCAATTCTTCTCGTTCCTT
CATGGATTTGAAGGCTCTCCTTTCTTCCTTGAATGACTTTGCATCCCTCTCGTTTGCTGAGAGTTGGGACAATGTTGGAT
TACTGGTGGAACCAAGCCCACCACATACTGTAAATACACTCTTCCTGACCAATGACCTGACTGAGGAAGTGATGGAGGAG
GTGCTGCAAAAGAAGGCAGACCTCATTCTCTCCTACCATCCGCCTATCTTCCGACCCATGAAGCGCATAACCTGGAACAC
CTGGAAGGAGCGCCTGGTGATCCGGGCTCTGGAGAACAGAGTCGGTATCTACTCTCCTCACACAGCCTATGATGCTGCGC
CCCAGGGCGTCAACAACTGGTTGGCTAAAGGGCTTGGAGCTTGTACCTCCAGGCCCATACATCCTTCCAAAGCTCCCAAC
TACCCTACAGAGGGAAACCACCGAGTAGAATTCAACGTTAACCACACCCAAGACCTGGACAAAGTCATGTCTGCAGTGAA
AGGAATTGACGGTGTTTCTGTCACTTCTTTTTCTGCTAGGACTGGTAATGAGGAACAAACACGGATTAATCTGAATTGTA
CTCAGAAGGCTTTGATGCAGGTGGTAGATTTTCTTTCCCGGAACAAACAACTTTATCAGAAGACGGAAATTCTGTCACTG
GAGAAGCCTTTGCTTCTACATACTGGAATGGGACGGTTATGCACACTGGATGAATCTGTCTGCCTGGCAACCATGATTGA
TCGAATAAAAAGACACCTAAAACTATCTCATATTCGCTTAGCCCTTGGGGTGGGGAGAACCTTAGAGTCCCAGGTCAAAG
TCGTGGCCCTGTGTGCTGGTTCTGGGAGCAGCGTTCTGCAGGGTGTTGAGGCTGACCTTTACCTCACAGGTGAGATGTCC
CATCATGATATTTTGGATGCTGCTTCCCAAGGAATAAATGTCATCGTCTGTGAACACAGCAACACTGAACGAGGCTTTCT
TTCTGACCTTCGAGATATGCTGGGTTCTCACTTGGAGAATAAGATAAATATTATCCTATCAGAGACTGACAGGGACCCTC
TTCAGGTGGTATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 12 .55 RPM
SRP007412_cerebellum 15 .81 RPM
SRP007412_heart 4 .03 RPM
SRP007412_kidney 9 .88 RPM
SRP007412_liver 5 .78 RPM



Species Parental gene accession Homology type Retrogenes number
Felis catus ENSFCAG00000023186 ortholog_one2one 1 retrogene
retro_fcat_589,
Macaca mulatta ENSMMUG00000006639 ortholog_one2one 1 retrogene
retro_mmul_444,
Nomascus leucogenys ENSNLEG00000006935 ortholog_one2one 1 retrogene
retro_nleu_1504,
Oryctolagus cuniculus ENSOCUG00000010667 possible_ortholog 16 retrogenes
retro_ocun_1105, retro_ocun_1534, retro_ocun_1539, retro_ocun_1691, retro_ocun_1692, retro_ocun_1710, retro_ocun_1729, retro_ocun_1749, retro_ocun_1789, retro_ocun_1828, retro_ocun_1837, retro_ocun_1841, retro_ocun_1846, retro_ocun_1847, retro_ocun_1854, retro_ocun_929,
Tupaia belangeri ENSTBEG00000000704 ortholog_one2one 1 retrogene
retro_tbel_3512,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_244 65.37 53.58
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Download FASTA sequences of all ENSPPYG00000013063 retrocopies