RetrogeneDB ID: | retro_ocun_1534 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | AAGW02079181:602..1493(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000010667 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.75 % |
Parental protein coverage: | 79.84 % |
Number of stop codons detected: | 7 |
Number of frameshifts detected | 4 |
Parental | VMEEALQKKADLILSYHPPIFLPMKRITWKSWKERLVIRALENRVAIYSPHTAYDAAPQGVNNWLSKGLG |
.MEEAL.KKADLI.S..PPIFL..K.ITW.S.KER.V..ALENRV.IYS.HTAYDAAPQG..NW.SKGLG | |
Retrocopy | LMEEALHKKADLIFSCLPPIFLHIKHITWMS*KERPVFWALENRVGIYSLHTAYDAAPQGLKNWFSKGLG |
Parental | ACTSRPICPSKAHSYPTEGT-HRVEFNVNHTQDLDKVVSAVREIEGVSVTSFSARTDGEEQTR-ISLNCT |
ACTSR.I.PSKAH.YP.EGT.H.V.FN..HTQD.DKVVSAV...EG..VTSFSAR.D.EE....ISLNCT | |
Retrocopy | ACTSRHIYPSKAHGYPIEGT<H*VQFNIKHTQDMDKVVSAVK-VEGAPVTSFSARID-EEKNK>ISLNCT |
Parental | EKALMQVVAQLSQNRQLYQRTEILSLEKPLL-LHTGMGRLCTLDESVSLATMIERIKRHLKLTHI-RLAL |
EK.L.QVVAQLSQNR.LYQRTEI.SL.KPLL.LHTG.GR.CTLDESV.LATMIE.IKRHLKLTHI..L.. | |
Retrocopy | EKSLIQVVAQLSQNR*LYQRTEIVSLQKPLL<LHTGIGRSCTLDESVALATMIE*IKRHLKLTHI>ALGV |
Parental | GVERTLESRVEVVALCAGSGSSVLRGVEADLYLTGEMSHHDVLDATSRGISVILCEHSNTERGFLSDLRD |
G..RTL.S.V..VALCAGSGSS.L..VEADLY.TG.MSH.D.LDATS.GI..ILCEHSNTE.GFLSDL.D | |
Retrocopy | G--RTLAS*VKAVALCAGSGSSILQDVEADLYFTGGMSHYDGLDATS*GINAILCEHSNTE*GFLSDLCD |
Parental | MLGVHLENRIHIVLSETDRDPLCVV |
.LG.HLEN.I.I.LSETDRD.LCVV | |
Retrocopy | ILGAHLENKINIILSETDRDLLCVV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 9 .99 RPM |
SRP017611_kidney | 0 .00 RPM | 15 .71 RPM |
SRP017611_liver | 0 .00 RPM | 5 .47 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Felis catus | ENSFCAG00000023186 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006639 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000006935 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000010667 | 16 retrocopies | |
Pongo abelii | ENSPPYG00000013063 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000000704 | 1 retrocopy |