Parental gene:

LSM2, ENSPPYG00000016461

Aliases:None
Description:LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:HGNC Symbol;Acc:13940]
Organism:Orangutan (Pongo abelii)
Coordinates:6:32297038..32307434(-)


>ENSPPYG00000016461
ATGAAGGAAACCCCGCCCCTTTCCCGGCTTCCTCCTCCCCTCGACTCTACCCAGCTTGCGCTCCCCAGCCACAAGTCGGC
CGCGCTTTCCCCTTCAGTGCTTGGAGCTTTCTGCGTCCCTTCCCGCTGCGCCTGCGCGGTCCCGCCTCGCCCCACGCGCG
GGCTCGCGCTTCGGTTTCCCCAGACCTGCTCGCAGCACCCTGTTCTCTTCCCGGTTCGGCCCGCTGCCCGCGGCGCCAGC
ACTATGCTCTTCTATTCTTTTTTCAAGTCCCTTGTGGGCAAGGATGTGGTCGTGGAACTAAAGAATGACCTGAGCATCTG
TGGAACCCTCCATTCTGTGGATCAGTATCTCAACATCAAACTAACTGACATCAGTGTCACAGACCCTGAGAAATATCCTC
ACATGTTATCAGTGAAGAACTGCTTCATTCGGGGCTCAGTGGTCCGATACGTGCAGCTGCCCGCAGATGAGGTCGACACA
CAGTTGCTACAGGATGCAGCAAGGAAGGAAGCCCTGCAGCAGAAACAGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 11 .28 RPM
SRP007412_cerebellum 19 .70 RPM
SRP007412_heart 8 .52 RPM
SRP007412_kidney 10 .74 RPM
SRP007412_liver 8 .78 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000002601 ortholog_one2one 2 retrogenes
retro_cjac_1828, retro_cjac_2088,
Felis catus ENSFCAG00000004511 ortholog_one2one 1 retrogene
retro_fcat_309,
Macaca mulatta ENSMMUG00000006832 ortholog_one2one 3 retrogenes
retro_mmul_1389, retro_mmul_1875, retro_mmul_2099,
Mus musculus ENSMUSG00000007050 ortholog_one2one 1 retrogene
retro_mmus_931,
Nomascus leucogenys ENSNLEG00000006371 ortholog_one2one 1 retrogene
retro_nleu_960,
Ochotona princeps ENSOPRG00000003668 ortholog_one2one 2 retrogenes
retro_opri_250, retro_opri_917,
Pan troglodytes ENSPTRG00000017986 ortholog_one2one 3 retrogenes
retro_ptro_1349, retro_ptro_2063, retro_ptro_2284,
Rattus norvegicus ENSRNOG00000048725 ortholog_one2one 1 retrogene
retro_rnor_1463,
Ictidomys tridecemlineatus ENSSTOG00000013144 ortholog_one2one 1 retrogene
retro_itri_189,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_2765 83.18 60.23
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Download FASTA sequences of all ENSPPYG00000016461 retrocopies