RetrogeneDB ID: | retro_cjac_2088 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 22:10023211..10023388(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LSM2 | ||
Ensembl ID: | ENSCJAG00000002601 | ||
Aliases: | None | ||
Description: | LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:HGNC Symbol;Acc:13940] |
Percent Identity: | 75. % |
Parental protein coverage: | 63.16 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC |
MLFYSFFKSLVGK.VV.EL.N...ICGTLHS.DQYLNIK....SV...EKYPH.LSVKNC | |
Retrocopy | MLFYSFFKSLVGKNVVMEL-NNVDICGTLHSIDQYLNIKRAGTSVIHLEKYPHKLSVKNC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 5 .75 RPM |
SRP051959_heart | 0 .04 RPM | 4 .00 RPM |
SRP051959_kidney | 0 .02 RPM | 4 .77 RPM |
SRP051959_liver | 0 .02 RPM | 3 .66 RPM |
SRP051959_lung | 0 .05 RPM | 5 .24 RPM |
SRP051959_lymph_node | 0 .09 RPM | 8 .47 RPM |
SRP051959_skeletal_muscle | 0 .02 RPM | 4 .91 RPM |
SRP051959_spleen | 0 .11 RPM | 6 .53 RPM |
Species | RetrogeneDB ID |
---|---|
Macaca mulatta | retro_mmul_1389 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000002601 | 2 retrocopies |
retro_cjac_1828, retro_cjac_2088 ,
|
Felis catus | ENSFCAG00000004511 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006832 | 3 retrocopies | |
Mus musculus | ENSMUSG00000007050 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000006371 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000003668 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000016461 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000017986 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000048725 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000013144 | 1 retrocopy |