Parental gene:

NKAP, ENSPPYG00000020679

Aliases:None
Description:NFKB activating protein [Source:HGNC Symbol;Acc:29873]
Organism:Orangutan (Pongo abelii)
Coordinates:X:118883095..118903918(-)


>ENSPPYG00000020679
ATGGCTCCGGTGTCCGGCTCGCGCAGCCCGGGTAGGGAGGCCTCGGGCTCGGGGGGAAGACGTCGCAGTTCGTCGAAGAG
TCCGAAGCCCAGCAAATCTGCCCGTTCCCCGCGGGGCCGCCGCTCTCGCTCGCACTCTTGCTCTCGGTCCGGGGATCGGA
ATGGACTCAGCCATCAGCTGGGTGGCCTCAGCCAAGGCTCCCGAAACCAGTCCTACCGCTCACGCTCGCGGTCGCGTTCT
AGAGAGCGGCCTTCTGCGCCCCGGGGCATCCCCTTCGCTTCTGCCTCCTCGTCAGTCTATTATGGCAGCTACTCGCGCCC
CTACGGGAGCGACAAGCCTTGGCCTAGCCTCCTCGACAAGGAAAGGGAGGAGAGCCTGCGGCAGAAGAGATTAAGTGAGA
GAGAGAGAATTGGAGAATTGGGAGCTCCTGAAGTATGGGGACTTTCTCCAAAGAATCCTGAACCAGATTCCGATGAGCAT
ACACCAGTGGAGGATGAAGAGCCAAAGAAAAGCACTACTTCAGCTTCTACTTCAGAAGAAGAAAAAAAGAAGAAGAAGAA
GTCTAGCCGTTCAAAAGAAAGGTCCAAGAAAAGGAGAAAGAAAAAATCATCGAAAAGAAAACATAAGTATTCTGAAGATA
GCGACAGTGACTCTGATTCTGAAACAGACTCCAGTGATGAAGATAACAAAAGGAGAGCAAAGAAAGCCAAGAAAAAGGAA
AAGAAGAAGAAACACAGATCGAAGAAATATAAGAAAAAGAGGTCTAAGAAGAGCAGAAAAGAGTCCAGTGATTCAAGCTC
TAAAGAATCCCAAGAAGAGTTTCTGGAAAATCCCTGGAAGGATCGAACAAAGGCCGAAGAACCATCAGATTTAATTGGCC
CAGAGGCTCCAAAAACACTTACCTCTCAAGATGATAAACCTTTGAACTATGGCCATGCTCTGTTACCTGGTGAAGGTGCA
GCTATGGCTGAATATGTAAAAGCTGGAAAACGTATCCCACGAAGAGGTGAAATTGGCTTGACAAGTGAAGAAATTGCATC
ATTTGAATGCTCAGGTTATGTAATGAGTGGTAGCAGGCATCGCCGAATGGAGGCTGTGCGACTGCGAAAAGAGAACCAGA
TCTACAGTGCTGATGAGAAGAGAGCCCTTGCATCCTTTAACCAAGAAGAGAGACGAAAGAGAGAGAACAAGATTCTGGCC
AGTTTTCGAGAAATGGTTTACAGAAAGACCAAAGGGAAGGATGACAAATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 9 .12 RPM
SRP007412_cerebellum 9 .73 RPM
SRP007412_heart 5 .33 RPM
SRP007412_kidney 7 .79 RPM
SRP007412_liver 6 .06 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000018433 ortholog_one2one 1 retrogene
retro_cfam_172,
Dasypus novemcinctus ENSDNOG00000000072 ortholog_one2one 1 retrogene
retro_dnov_50,
Echinops telfairi ENSETEG00000001007 ortholog_one2many 1 retrogene
retro_etel_1882,
Felis catus ENSFCAG00000004392 ortholog_one2one 1 retrogene
retro_fcat_10,
Homo sapiens ENSG00000101882 ortholog_one2one 1 retrogene
retro_hsap_15,
Loxodonta africana ENSLAFG00000002962 ortholog_one2one 1 retrogene
retro_lafr_37,
Macaca mulatta ENSMMUG00000012382 ortholog_one2one 1 retrogene
retro_mmul_121,
Mus musculus ENSMUSG00000016409 ortholog_one2one 1 retrogene
retro_mmus_279,
Nomascus leucogenys ENSNLEG00000014922 ortholog_one2one 1 retrogene
retro_nleu_88,
Otolemur garnettii ENSOGAG00000001004 ortholog_one2one 1 retrogene
retro_ogar_239,
Pan troglodytes ENSPTRG00000022233 ortholog_one2one 1 retrogene
retro_ptro_117,
Rattus norvegicus ENSRNOG00000031169 ortholog_one2one 1 retrogene
retro_rnor_93,
Sus scrofa ENSSSCG00000012613 ortholog_one2one 1 retrogene
retro_sscr_13,
Ictidomys tridecemlineatus ENSSTOG00000001134 ortholog_one2one 1 retrogene
retro_itri_73,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_198 69.88 81.97
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Download FASTA sequences of all ENSPPYG00000020679 retrocopies