Parental gene:

YY1, ENSPPYG00000025949

Aliases:None
Description:YY1 transcription factor [Source:HGNC Symbol;Acc:12856]
Organism:Orangutan (Pongo abelii)
Coordinates:14:101780234..101796420(+)


>ENSPPYG00000025949
TCAGATGAAAAAAAAGATATTGACCATGAGACGGTGGTTGAAGAACAGATCATTGGAGAGAACTCACCTCCTGATTATTC
AGAATATATGACAGGAAAGAAACTTCCTCCTGGAGGAATACCTGGCATTGACCTCTCAGATCCCAAACAACTGGCAGAAT
TTGCTAGAATGAAGCCAAGAAAAATTAAAGAAGATGATGCTCCAAGAACAATAGCTTGCCCTCATAAAGGCTGCACAAAG
ATGTTCAGGGATAACTCGGCCATGAGAAAACATCTGCACACCCACGGTCCCAGAGTCCACGTCTGTGCAGAATGTGGCAA
AGCTTTTGTTGAGAGTTCAAAACTAAAACGACACCAACTGGTTCATACTGGAGAGAAGCCCTTTCAGTGCACGTTCGAAG
GCTGTGGGAAACGCTTTTCACTGGACTTCAATTTGCGCACACATGTGCGAATCCATACCGGAGACAGGCCCTATGTGTGC
CCCTTCGATGGTTGTAATAAGAAGTTTGCTCAGTCAACTAACCTGAAATCTCACATCTTAACACATGCTAAGGCCAAAAA
CAACCAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 8 .79 RPM
SRP007412_cerebellum 19 .09 RPM
SRP007412_heart 5 .72 RPM
SRP007412_kidney 9 .78 RPM
SRP007412_liver 9 .61 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011146 possible_ortholog 1 retrogene
retro_amel_2,
Callithrix jacchus ENSCJAG00000016853 ortholog_one2many 2 retrogenes
retro_cjac_1931, retro_cjac_4045,
Equus caballus ENSECAG00000005805 possible_ortholog 1 retrogene
retro_ecab_97,
Homo sapiens ENSG00000100811 ortholog_one2one 2 retrogenes
retro_hsap_106, retro_hsap_97,
Gorilla gorilla ENSGGOG00000026332 ortholog_one2one 2 retrogenes
retro_ggor_190, retro_ggor_2,
Mus musculus ENSMUSG00000021264 possible_ortholog 1 retrogene
retro_mmus_190,
Nomascus leucogenys ENSNLEG00000000999 ortholog_one2one 3 retrogenes
retro_nleu_1092, retro_nleu_116, retro_nleu_2225,
Otolemur garnettii ENSOGAG00000006955 ortholog_one2one 4 retrogenes
retro_ogar_1231, retro_ogar_1804, retro_ogar_1857, retro_ogar_289,
Pan troglodytes ENSPTRG00000006717 ortholog_one2one 3 retrogenes
retro_ptro_3093, retro_ptro_45, retro_ptro_494,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_145 76.00 92.59
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2. retro_pabe_534 70.12 86.24
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3. retro_pabe_3616 79.29 89.42
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Download FASTA sequences of all ENSPPYG00000025949 retrocopies