RetrogeneDB ID:

retro_amel_2

Retrocopy
location
Organism:Panda (Ailuropoda melanoleuca)
Coordinates:GL192774.1:287020..287932(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSAMEG00000019068
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSAMEG00000011146
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_amel_2
ATGGATCAGCAACTGAAGAAAAAGGCAAAGACTTGTGGGCAGAAAGGCCTGGGTAGAAGAGCCTTCGGGAGGGATAAGCC
AAGGCCATCTAAGCCACAGCCAGTCCAGCAGGGACTTCTCGACACAACATGGGCCTTAGAAGATGAAGGTCTGTTCTTTG
AGACTAGCCATCTGGTTGTTGGAGAAGACTCCTTCTCTGACTGTTACATAGAATGCATAATAAGAGGTGAGTTTTCCGAA
CCCATTCTGGAAGGAGACTCACTTAAGTCCCCTGACTACCCGGAAGAAGAATCAGAACAAGAGCTTTCGCAACAGGTTCT
CACAGCAAGGTCGCTTCTAGAAAAATCCTTGAAATGCGCACAAAAAGGGACAAAACAAGAACTTCCTCAACAGGCTATTA
GAGAGAATTCACAGCTTGAGTATTCCGAGTATGTAACAGGCAAGAAGTTTCCTCTTGGAGGAATACGCAGCACTGACTTA
TCAGCTCCTAAACAGTTTGCAGAATTTGCTAGAAAGAAGCCAACAAAAGATAAGGAATATGAGACTCCAGAAAGAATTGT
TTGTCCTCACAGTGGATGCCCAAAAAAGTTGAAGAATAGGGCTTCCCTGCGAAAGCATCTCCTTGTCCATGGTCCTCGAG
ATCACGTATGTGCAGAATGTGGGAAAGCATTCAATGAGAGTTCAAAACTGAAAAGACATTTTCTGGTTCATACTGGAGAG
AAGCCATTTCGGTGCACTTTTGAAGGGTGCGGAAAACGCTTTTCCCTGGACTACAATTTGCGTACACACGTCCGGATCCA
CACTGGGGAGAAACGTTTTGTGTGTCCCTTTAAAAGCTGTCACAAGAGGTTTATTCAGTCAAATAACCTGAAAGTTCACA
TCTTAACTCATACAAAGACCAACAAAAATCAA

ORF - retro_amel_2 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 68.18 %
Parental protein coverage: 58.67 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalEQIIGENSPPDYSEYMTGKKLPPGGIPGIDLSDPKQLAEFARMKPRKIKEDDAPRTIACPHKKGCTKMFR
.Q.I.ENS...YSEY.TGKK.P.GGI...DLS.PKQ.AEFAR.KP.K.KE...P..I.CPH..GC.K...
RetrocopyQQAIRENSQLEYSEYVTGKKFPLGGIRSTDLSAPKQFAEFARKKPTKDKEYETPERIVCPHS-GCPKKLK
ParentalDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHT
.....RKHL..HGPR.HVCAECGKAF.ESSKLKRH.LVHTGEKPF.CTFEGCGKRFSLD.NLRTHVRIHT
RetrocopyNRASLRKHLLVHGPRDHVCAECGKAFNESSKLKRHFLVHTGEKPFRCTFEGCGKRFSLDYNLRTHVRIHT
ParentalGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ
G....VCPF..C.K.F.QS.NLK.HILTH.K...NQ
RetrocopyGEKRFVCPFKSCHKRFIQSNNLKVHILTHTKTNKNQ

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Ailuropoda melanoleuca was not studied using RNA-Seq expression data.
Ailuropoda melanoleuca was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_amel_2 retrocopy.
Ailuropoda melanoleuca was not studied using FANTOM5 data.
retro_amel_2 was not experimentally validated.

Retrocopy orthology:
Ailuropoda melanoleuca does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 14 parental genes, and 27 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG00000011146 1 retrocopy
retro_amel_2 ,
Bos taurus ENSBTAG000000208191 retrocopy
Callithrix jacchus ENSCJAG000000168532 retrocopies
Cavia porcellus ENSCPOG000000208092 retrocopies
Equus caballus ENSECAG000000058051 retrocopy
Homo sapiens ENSG000001008112 retrocopies
Gorilla gorilla ENSGGOG000000263322 retrocopies
Mustela putorius furoENSMPUG000000029311 retrocopy
Mus musculus ENSMUSG000000212641 retrocopy
Nomascus leucogenys ENSNLEG000000009993 retrocopies
Oryctolagus cuniculus ENSOCUG000000269381 retrocopy
Otolemur garnettii ENSOGAG000000069554 retrocopies
Pongo abelii ENSPPYG000000259493 retrocopies
Pan troglodytes ENSPTRG000000067173 retrocopies



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