RetrogeneDB ID: | retro_amel_2 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192774.1:287020..287932(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSAMEG00000019068 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSAMEG00000011146 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.18 % |
Parental protein coverage: | 58.67 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EQIIGENSPPDYSEYMTGKKLPPGGIPGIDLSDPKQLAEFARMKPRKIKEDDAPRTIACPHKKGCTKMFR |
.Q.I.ENS...YSEY.TGKK.P.GGI...DLS.PKQ.AEFAR.KP.K.KE...P..I.CPH..GC.K... | |
Retrocopy | QQAIRENSQLEYSEYVTGKKFPLGGIRSTDLSAPKQFAEFARKKPTKDKEYETPERIVCPHS-GCPKKLK |
Parental | DNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHT |
.....RKHL..HGPR.HVCAECGKAF.ESSKLKRH.LVHTGEKPF.CTFEGCGKRFSLD.NLRTHVRIHT | |
Retrocopy | NRASLRKHLLVHGPRDHVCAECGKAFNESSKLKRHFLVHTGEKPFRCTFEGCGKRFSLDYNLRTHVRIHT |
Parental | GDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ |
G....VCPF..C.K.F.QS.NLK.HILTH.K...NQ | |
Retrocopy | GEKRFVCPFKSCHKRFIQSNNLKVHILTHTKTNKNQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011146 | 1 retrocopy |
retro_amel_2 ,
|
Bos taurus | ENSBTAG00000020819 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000016853 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000020809 | 2 retrocopies | |
Equus caballus | ENSECAG00000005805 | 1 retrocopy | |
Homo sapiens | ENSG00000100811 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000026332 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000002931 | 1 retrocopy | |
Mus musculus | ENSMUSG00000021264 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000999 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000026938 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000006955 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000025949 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000006717 | 3 retrocopies |