Parental gene:

ENSECAG00000005805

Aliases:None
Description:None
Organism:Horse (Equus caballus)
Coordinates:24:42189843..42202039(+)


>ENSECAG00000005805
TTATGGTGTGTTTCAGATGAGAAAAAAGATATTGACCATGAGACAGTGGTTGAAGAACAGATCATCGGGGAGAACTCACC
TCCTGATTACTCAGAGTACATGACAGGAAAGAAACTTCCGCCTGGAGGGATACCCGGCATTGACCTCTCAGATCCCAAAC
AGCTGGCAGAATTTGCTAGAATGAAGCCAAGAAAAATTAAAGAAGATGATGCTCCAAGAACAATAGCTTGCCCTCATAAA
GGCTGCACAAAGATGTTCAGGGATAACTCTGCCATGAGAAAACATCTGCACACCCACGGTCCCAGAGTCCACGTCTGTGC
AGAATGTGGCAAAGCTTTTGTTGAGAGCTCAAAACTAAAACGACACCAACTGGTTCATACTGGAGAGAAGCCCTTTCAGT
GCACGTTCGAAGGCTGCGGGAAACGCTTTTCACTGGACTTCAATTTGCGCACACATGTGCGAATCCATACTGGAGACAGG
CCCTATGTGTGCCCCTTCGATGGTTGTAATAAGAAGTTTGCTCAGTCGACTAACCTGAAATCTCACATCTTAACACACGC
TAAGGCCAAAAACAACCAGTGA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 22 .51 RPM
SRP021940_embryo 28 .74 RPM
SRP021940_cerebellum 23 .27 RPM
SRP021940_testis 31 .84 RPM
SRP021940_placental_villous 32 .76 RPM
SRP021940_articular_cartilage 22 .20 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011146 possible_ortholog 1 retrogene
retro_amel_2,
Bos taurus ENSBTAG00000020819 possible_ortholog 1 retrogene
retro_btau_91,
Callithrix jacchus ENSCJAG00000016853 possible_ortholog 2 retrogenes
retro_cjac_1931, retro_cjac_4045,
Cavia porcellus ENSCPOG00000020809 possible_ortholog 2 retrogenes
retro_cpor_1220, retro_cpor_1522,
Homo sapiens ENSG00000100811 possible_ortholog 2 retrogenes
retro_hsap_106, retro_hsap_97,
Gorilla gorilla ENSGGOG00000026332 possible_ortholog 2 retrogenes
retro_ggor_190, retro_ggor_2,
Mustela putorius furo ENSMPUG00000002931 possible_ortholog 1 retrogene
retro_mputfur_867,
Mus musculus ENSMUSG00000021264 possible_ortholog 1 retrogene
retro_mmus_190,
Nomascus leucogenys ENSNLEG00000000999 possible_ortholog 3 retrogenes
retro_nleu_1092, retro_nleu_116, retro_nleu_2225,
Oryctolagus cuniculus ENSOCUG00000026938 possible_ortholog 1 retrogene
retro_ocun_1871,
Otolemur garnettii ENSOGAG00000006955 possible_ortholog 4 retrogenes
retro_ogar_1231, retro_ogar_1804, retro_ogar_1857, retro_ogar_289,
Pongo abelii ENSPPYG00000025949 possible_ortholog 3 retrogenes
retro_pabe_145, retro_pabe_3616, retro_pabe_534,
Pan troglodytes ENSPTRG00000006717 possible_ortholog 3 retrogenes
retro_ptro_3093, retro_ptro_45, retro_ptro_494,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_97 69.14 90.67
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Download FASTA sequences of all ENSECAG00000005805 retrocopies