RetrogeneDB ID: | retro_mmus_190 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | X:157567631..157568768(-) | ||
Located in intron of: | ENSMUSG00000046873 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000091736 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Yy1 | ||
Ensembl ID: | ENSMUSG00000021264 | ||
Aliases: | Yy1, AW488674, NF-E1 | ||
Description: | YY1 transcription factor [Source:MGI Symbol;Acc:MGI:99150] |
Percent Identity: | 70. % |
Parental protein coverage: | 60.39 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ASSGGGRVKKGGGKKSGKKSYLGGGAGAAGGGGADPGNKKWEQKQVQIKTLEGEFSVTMWSSDEKKDIDH |
A..G.G......G...G........AGA.....AD.G.K.WEQKQ.....L.GEF..TMW.....K.... | |
Retrocopy | AENGQGELSPYEGNLCGLTTFIE--AGAEESVNADLGDKQWEQKQID--GLDGEFPFTMWDDVNEKE--- |
Parental | ETVVEEQIIGENSPPDYSEYMTGKKLPPGGIPGIDLSDPKQLAEFARMKPRKIKEDDAPRTIACPHKGCT |
....EEQ..GE.SPPDYSEYMTGKK.PP.GIPGIDLSDPKQLAEF..M.P.K.K..D.PR.IAC.HKGC. | |
Retrocopy | DPIAEEQA-GE-SPPDYSEYMTGKKFPPEGIPGIDLSDPKQLAEFTSMRPKKPK-GDFPRPIACSHKGCE |
Parental | KMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHV |
KMF.DNSAMRKHLH.HGPRVHVCAECGKAFVESSKLKRHQLVHTGEKP.QCTFEGCG.RFSLDFNLRTHV | |
Retrocopy | KMFKDNSAMRKHLHIHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPYQCTFEGCGRRFSLDFNLRTHV |
Parental | RIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ |
RIHTGD.P.VCPFD.CNKKFAQSTNLKSHILTH.K.KN.Q | |
Retrocopy | RIHTGDKPFVCPFDACNKKFAQSTNLKSHILTHVKNKNDQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .75 RPM | 26 .98 RPM |
SRP007412_cerebellum | 1 .04 RPM | 24 .97 RPM |
SRP007412_heart | 1 .43 RPM | 21 .67 RPM |
SRP007412_kidney | 1 .39 RPM | 33 .13 RPM |
SRP007412_liver | 0 .49 RPM | 29 .55 RPM |
SRP007412_testis | 1 .10 RPM | 30 .78 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_156010 | 1007 libraries | 23 libraries | 26 libraries | 13 libraries | 3 libraries |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_2 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011146 | 1 retrocopy | |
Bos taurus | ENSBTAG00000020819 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000016853 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000020809 | 2 retrocopies | |
Equus caballus | ENSECAG00000005805 | 1 retrocopy | |
Homo sapiens | ENSG00000100811 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000026332 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000002931 | 1 retrocopy | |
Mus musculus | ENSMUSG00000021264 | 1 retrocopy |
retro_mmus_190 ,
|
Nomascus leucogenys | ENSNLEG00000000999 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000026938 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000006955 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000025949 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000006717 | 3 retrocopies |