Parental gene:

HDGF, ENSPTRG00000001474

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:1:135041891..135052388(-)


>ENSPTRG00000001474
ATGCACCCGGAAGGTGGCCAATTTGTGCCTCAACTCCTTGGCCATCTCCTGGCTACCAAACTCAAGCGTTTCCTCCTTAG
CAAAGGCGGACGTAGGGCTCAAATCCCCGACGTTTCCAGGGCCACCCCCCATACGATTGACGAGATGCCTGAGGCTGCCG
TGAAATCAACAGCCAACAAATACCAAGTCTTTTTTTTCGGGACCCACGAGACGGCATTCCTGGGCCCCAAAGACCTCTTC
CCTTACGAGGAATCCAAGGAGAAGTTTGGCAAGCCCAACAAGAGGAAAGGGTTCAGCGAGGGGCTGTGGGAGATCGAGAA
CAACCCTACTGTCAAGGCTTCCGGCTATCAGTCCTCCCAGAAAAAGAGCTGTGTGGAAGAGCCTGAACCCGAGCCCGAAG
CTGCAGAGGGTGACGGTGATAAGAAGGGGAATGCAGAGGGCAGCAGCGACGAGGAAGGGAAGCTGGTCATTGATGAGCCA
GCCAAGGAGAAGAACGAGAAAGGAGCGCTGAAGAGGAGAGCAGGGGACTTGCTGGAGGACTCTCCTAAACGTCCCAAGGA
GGCAGAAAACCCTGAAGGAGAGGAGAAGGAGGCAGCCACCTTGGAGGGGGAGAGGCCCCTTCCTATGGAGGTGGAAAAGA
ATAGCACCCCCTCTGAGCCTGGCTCTGGCCGGGGGCCTCCCCAAGAGGAAGAAGAAGAGGAGGATGAAGAGGAAGAGGCT
ACCAAGGAAGATGCTGAGGCCCCAGGCATCAGAGATCATGAGAGCCTGTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 86 .44 RPM
SRP007412_cerebellum 148 .59 RPM
SRP007412_heart 102 .01 RPM
SRP007412_kidney 255 .56 RPM
SRP007412_liver 240 .01 RPM
SRP007412_testis 46 .16 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000039793 ortholog_one2one 1 retrogene
retro_btau_216,
Callithrix jacchus ENSCJAG00000006157 ortholog_one2one 2 retrogenes
retro_cjac_338, retro_cjac_4022,
Dasypus novemcinctus ENSDNOG00000010231 ortholog_one2many 1 retrogene
retro_dnov_4,
Equus caballus ENSECAG00000011178 ortholog_one2one 1 retrogene
retro_ecab_5,
Echinops telfairi ENSETEG00000005243 ortholog_one2one 1 retrogene
retro_etel_1899,
Homo sapiens ENSG00000143321 ortholog_one2one 1 retrogene
retro_hsap_33,
Myotis lucifugus ENSMLUG00000010413 ortholog_one2one 1 retrogene
retro_mluc_257,
Mus musculus ENSMUSG00000004897 ortholog_one2one 1 retrogene
retro_mmus_3647,
Pongo abelii ENSPPYG00000000703 ortholog_one2one 1 retrogene
retro_pabe_6,
Pan troglodytes ENSPTRG00000020786 within_species_paralog 1 retrogene
retro_ptro_2811,
Sus scrofa ENSSSCG00000006468 ortholog_one2one 1 retrogene
retro_sscr_65,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_1 65.97 56.25
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSPTRG00000001474 retrocopies