RetrogeneDB ID: retro_mluc_257

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429889:523803..524526(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000003568
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: HDGF
• Ensembl ID: ENSMLUG00000010413
• Aliases: None
• Description: None

Sequence

>retro_mluc_257
ATGTCGGATTACTGCTCTCCCAAATACCAGAGCGGGGACTTGGTGTTCGCCAAACTCAAGGGCTACGCGCACTGGCCCGC
CAGGATCGAGCACATGGCCGAACACAACCGCTATCAAGTGTTCTTCTTCGGGACCCACGAGACGGCCCTCCTGGGCCCCA
AACACCTCTTCCCGTACGCCGAGTGCAAGGAGAAGTTCGGTAAGCCCAACAAGAGGAGGGGCTTCAGCGAGGGGCTGTGG
GAGATCGAGAACAACCCCACCATCCAGGCCTGCGACGACCAGGGCCCCCTCGAGAAGAGCAACGCCGAGGGGCCTCCGCC
CAACGCCTCCGAGGCCGGTGAGGCCCAGAAGGGCGGCCCCCGCGGCGGCGACGAGAACGGGGAGCTGCGCGTGGAAGAGC
CGGCCCGGAAGCGGGAGGAGATGGGGCCCTGGAAGCGAGAGGAGATGGGGCCCCTGAAGCGGAGCGCCGAGGACCTGCTG
GAGGACGTCCTCAAACGCCCCAAGGAGGCCGATCTGGAAGGCGAGGAGGCGGTGGCCGCGGGGGCGGAGGCGGAAGCGGA
AGTGGAAGCTGCCTGCGAGGCTGCAAGGCCCGTGTTGGTGGAGTCGTTGGAGCAGGGCCCCGCCTGGGGGCCGCCGCAGG
AAGACGGGGAGCTGCAGGAAGAGGCTACCGAGTTGGGAGGGGAGGCTGAGGTCCCGGGTGATGGAGACCACGAGAGCCTG
TAG

Alignment

ORF - retro_mluc_257 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 56.29 %
• Parental protein coverage: 58.04 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  NKYQVFFFGTHETAFLGPKDLFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEP
          N.YQVFFFGTHETA.LGPK.LFPY.E.KEKFGKPNKR.GFSEGLWEIENNPT..A...Q....KS..E.P
Retrocopy NRYQVFFFGTHETALLGPKHLFPYAECKEKFGKPNKRRGFSEGLWEIENNPTIQACDDQGPLEKSNAEGP

Parental  EPEP-EPEAAEGDGDKKG--NTEGSSDEEGKLVIDEPTKEKNEKGALKRRAGDLLEDSPKRPKEAEDPEG
          .P...E...A...G...G..N.E....E..............E.G.LKR.A.DLLED..KRPKEA.D.EG
Retrocopy PPNASEAGEAQKGGPRGGDENGELRVEEPARKREEMGPWKREEMGPLKRSAEDLLEDVLKRPKEA-DLEG

Parental  EEKEVANLEGE
          EE...A..E.E
Retrocopy EEAVAAGAEAE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_257 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000039793	1 retrocopy	retro_btau_216,
Callithrix jacchus	ENSCJAG00000006157	2 retrocopies	retro_cjac_338, retro_cjac_4022,
Dasypus novemcinctus	ENSDNOG00000010231	1 retrocopy	retro_dnov_4,
Equus caballus	ENSECAG00000011178	1 retrocopy	retro_ecab_5,
Echinops telfairi	ENSETEG00000005243	1 retrocopy	retro_etel_1899,
Homo sapiens	ENSG00000143321	1 retrocopy	retro_hsap_33,
Myotis lucifugus	ENSMLUG00000010413	1 retrocopy	retro_mluc_257 ,
Mus musculus	ENSMUSG00000004897	1 retrocopy	retro_mmus_3647,
Pongo abelii	ENSPPYG00000000703	1 retrocopy	retro_pabe_6,
Pan troglodytes	ENSPTRG00000001474	1 retrocopy	retro_ptro_1,
Sus scrofa	ENSSSCG00000006468	1 retrocopy	retro_sscr_65,