Parental gene: | HSPE1, ENSPTRG00000012774 |
| Aliases: | None |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 2B:202188384..202191812(+) |
>ENSPTRG00000012774
ATGGCAGGACAAGCGTTTAGAAAGTTTCTTCCACTCTTTGACCGAGTATTGGTTGAAAGGAGTGCTGCTGAAACTGTAAC
CAAAGGAGGCATTATGCTTCCAGAAAAATCTCAAGGAAAAGTATTGCAAGCAACAGTAGTCGCTGTTGGATCGGGTTCTA
AAGGAAAGGGTGGAGAGATTCAACCAGTTAGCGTGAAAGTTGGAGATAAAGTTCTTCTCCCAGAATATGGAGGCACCAAA
GTAGTTCTAGATGACAAGGATTATTTCCTATTTAGAGATGGTGACATTCTTGGAAAGTACGTAGACTGA
ATGGCAGGACAAGCGTTTAGAAAGTTTCTTCCACTCTTTGACCGAGTATTGGTTGAAAGGAGTGCTGCTGAAACTGTAAC
CAAAGGAGGCATTATGCTTCCAGAAAAATCTCAAGGAAAAGTATTGCAAGCAACAGTAGTCGCTGTTGGATCGGGTTCTA
AAGGAAAGGGTGGAGAGATTCAACCAGTTAGCGTGAAAGTTGGAGATAAAGTTCTTCTCCCAGAATATGGAGGCACCAAA
GTAGTTCTAGATGACAAGGATTATTTCCTATTTAGAGATGGTGACATTCTTGGAAAGTACGTAGACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 33 .00 RPM |
| SRP007412_cerebellum | 43 .05 RPM |
| SRP007412_heart | 125 .59 RPM |
| SRP007412_kidney | 129 .40 RPM |
| SRP007412_liver | 156 .86 RPM |
| SRP007412_testis | 45 .63 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Dasypus novemcinctus | ENSDNOG00000013246 | ortholog_one2one | 27 retrogenes |
retro_dnov_1088, retro_dnov_1117, retro_dnov_1214, retro_dnov_1375, retro_dnov_1391, retro_dnov_1405, retro_dnov_1412, retro_dnov_1428, retro_dnov_1445, retro_dnov_1546, retro_dnov_1647, retro_dnov_1652, retro_dnov_1686, retro_dnov_1821, retro_dnov_2176, retro_dnov_2291, retro_dnov_2413, retro_dnov_2569, retro_dnov_2625, retro_dnov_2652, retro_dnov_418, retro_dnov_481, retro_dnov_483, retro_dnov_490, retro_dnov_524, retro_dnov_554, retro_dnov_966,
|
| Macaca mulatta | ENSMMUG00000010491 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000025876 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000016078 | ortholog_one2one | 7 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_287 | 91.76 | 82.35 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_374 | 90.00 | 98.04 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_667 | 83.33 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ptro_726 | 72.92 | 92.16 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ptro_786 | 94.12 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_ptro_926 | 95.10 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_ptro_1033 | 88.24 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_ptro_1117 | 94.17 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_ptro_1152 | 93.62 | 92.16 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_ptro_1591 | 65.71 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 11. | retro_ptro_1752 | 87.50 | 94.12 | Please wait, loading | Please wait, loading | Please wait, loading |
| 12. | retro_ptro_1907 | 64.18 | 61.76 | Please wait, loading | Please wait, loading | Please wait, loading |
| 13. | retro_ptro_1908 | 74.23 | 92.16 | Please wait, loading | Please wait, loading | Please wait, loading |
| 14. | retro_ptro_2343 | 79.61 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 15. | retro_ptro_2406 | 58.00 | 96.08 | Please wait, loading | Please wait, loading | Please wait, loading |
| 16. | retro_ptro_2485 | 70.87 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 17. | retro_ptro_2847 | 74.16 | 86.27 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000012774 retrocopies