Parental gene:

H1FOO, ENSPTRG00000015380

Aliases:None
Description:H1 histone family, member O, oocyte-specific [Source:HGNC Symbol;Acc:18463]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:3:132979767..132988200(+)


>ENSPTRG00000015380
ATGGCTCCTGGGAGCGTCACCAGCGACATCTTACCCTCCTCGACTTCCACAGCAGGATCATCCAGGTCTCCTGAATCTGA
AAAGCCAGGCCCGAGCCACGGCGGTGTCCCACCGGGAGGCCCGAGCCACAGCAGCCTCCCGGTGGGACGCCGCCACCCCC
CGGTGCTGCGCATGGTGCTGGAGGCGCTGCAGGCTGGGGAGCAGCGCCGGGGCACGTCGGTGGCGGCTATCAAGCTCTAC
ATCCTGCACAAGTACCCAACAGTGGACGTCCTTCGCTTCAAGTACCTGCTGAAGCAGGCGCTGGCCACTGGCATGCGCCG
TGGCCTCCTCGCCAGGCCCCTCAACTCCAAAGCCAGGGGGGCCACTGGCAGCTTCAAATTAGTTCCCAAGCACAAGAAGA
AAATCCAGCCCAGGAAGATGGCCCCCGCGACGGCTCCCAGGAGAGCGGGCGAGGCCAAGGGGAAGGGCCCCAAGAAACCA
AGTGAGGCCAAGGAGGACCCTCCCAACGTGGGCCAGGTGAAAAAGGCAGCCAAGAGGCCAGCAAAGGTGCAGAAGGCTCC
TCCCAAGCCAGGCGCAGCCACAGAGAAGGCTTGCAAGCAAGGCGGCGCGGCCAAGGACACCAGGGCACAGTCGGGAGAGG
CTAGGAAGGTACCCCCCAAGCCAGACAAGGCCATGCGGGCACCTTCCAGTGCCGGTGGGCTCAGCAGGAAGGCAAAGGCC
AAAGGCAGCAGGAGCAGCCAAGGAGATGCTGAGGCCTACAGGAAAACCAAAGCTGAGAGTAAGAGTTCAAAACCCACGGC
CAGCAAGGTCAAGAATGGTGCTGCTTCCCCAACCAAAAAGAAGGTGGTGGCCAAGGCCAAGGCCCCTAAAGCTGGGCAGG
GGCCAAACACCAAGGCTGCTGCTCCTGCTAAGGGCAGTGGGTCCAAGGTGGTACCTGCACATTTGTCCAGGAAGACAGAG
GCCCCCAAGGGCCCAAGAAAGGCTGGGCTGCCCATCAAGGCCTCATCATCCAAAGTGTCCAGCCAGAAGGCTGAAGCTTA
G

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 0 .00 RPM
SRP007412_cerebellum 0 .00 RPM
SRP007412_heart 0 .00 RPM
SRP007412_kidney 0 .00 RPM
SRP007412_liver 0 .00 RPM
SRP007412_testis 4 .53 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000017209 ortholog_one2many 2 retrogenes
retro_cjac_3976, retro_cjac_981,
Felis catus ENSFCAG00000000094 ortholog_one2one 2 retrogenes
retro_fcat_1139, retro_fcat_416,
Homo sapiens ENSG00000178804 ortholog_one2one 1 retrogene
retro_hsap_2799,
Gorilla gorilla ENSGGOG00000000735 ortholog_one2one 1 retrogene
retro_ggor_1946,
Myotis lucifugus ENSMLUG00000025226 ortholog_one2one 2 retrogenes
retro_mluc_1278, retro_mluc_1318,
Oryctolagus cuniculus ENSOCUG00000029379 ortholog_one2one 1 retrogene
retro_ocun_1483,
Ochotona princeps ENSOPRG00000010371 ortholog_one2one 2 retrogenes
retro_opri_403, retro_opri_624,
Pongo abelii ENSPPYG00000013414 ortholog_one2one 1 retrogene
retro_pabe_2225,
Pteropus vampyrus ENSPVAG00000007110 ortholog_one2one 1 retrogene
retro_pvam_808,
Tursiops truncatus ENSTTRG00000011276 ortholog_one2one 1 retrogene
retro_ttru_1111,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_1896 76.44 64.16
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Download FASTA sequences of all ENSPTRG00000015380 retrocopies