Parental gene: | HMGA1, ENSPTRG00000040884 |
| Aliases: | None |
| Description: | Pan troglodytes high mobility group AT-hook 1 (HMGA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001246496] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 6:34661918..34671353(+) |
>ENSPTRG00000040884
ATGAGTGAGTCGAGCTCGAAGTCCAGCCAGCCCTTGGCCTCCAAGCAGGAAAAGGACGGCACTGAGAAGCGGGGCCGGGG
CAGGCCGCGCAAGCAGCCTCCGGTGAGTCCCGGGACAGCGCTGGTAGGGAGTCAGAAGGAGCCCAGCGAAGTGCCAACAC
CTAAGAGACCTCGGGGCCGACCAAAGGGAAGCAAAAACAAGGGTGCTGCCAAGACCCGGAAAACCACCACAACTCCAGGA
AGGAAACCAAGGGGCAGACCCAAAAAACTGGAGAAGGAGGAAGAGGAGGGCATCTCGCAGGAGTCCTCGGAGGAGGAGCA
GTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 59 .04 RPM |
| SRP007412_cerebellum | 58 .65 RPM |
| SRP007412_heart | 20 .23 RPM |
| SRP007412_kidney | 17 .89 RPM |
| SRP007412_liver | 50 .67 RPM |
| SRP007412_testis | 41 .84 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000001061 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000015226 | possible_ortholog | 2 retrogenes | |
| Homo sapiens | ENSG00000137309 | ortholog_one2one | 4 retrogenes | |
| Myotis lucifugus | ENSMLUG00000010085 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000019529 | possible_ortholog | 2 retrogenes | |
| Mus musculus | ENSMUSG00000046711 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000008303 | possible_ortholog | 1 retrogene | |
| Pongo abelii | ENSPPYG00000029838 | possible_ortholog | 4 retrogenes | |
| Rattus norvegicus | ENSRNOG00000000488 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_499 | 54.29 | 64.49 | Please wait, loading  |
Please wait, loading |
Please wait, loading |
| 2. | retro_ptro_789 | 96.26 | 100.00 | Please wait, loading |
Please wait, loading |
Please wait, loading |
| 3. | retro_ptro_807 | 85.71 | 57.94 | Please wait, loading |
Please wait, loading |
Please wait, loading |
| 4. | retro_ptro_1611 | 93.46 | 100.00 | Please wait, loading |
Please wait, loading |
Please wait, loading |
| 5. | retro_ptro_2053 | 89.72 | 100.00 | Please wait, loading |
Please wait, loading |
Please wait, loading |
| 6. | retro_ptro_3098 | 86.92 | 100.00 | Please wait, loading |
Please wait, loading |
Please wait, loading |
Download FASTA sequences of all ENSPTRG00000040884 retrocopies