RetrogeneDB ID: | retro_amel_1637 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193817.1:341268..341523(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGA1 | ||
Ensembl ID: | ENSAMEG00000001061 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 62.79 % |
Parental protein coverage: | 81.73 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTPGRKPRGR-PKKLE |
.R.RGR........P...LVG...EPSEVPTPK.PR.R..G.KNK.AAKT..T.T.PGRKPR...PKKLE | |
Retrocopy | QRSRGRAGRSSSWVPRMVLVGAG-EPSEVPTPKTPRARQRGTKNKSAAKTGNTATAPGRKPRSKPPKKLE |
Parental | KEEEEGISQESSEEEQ |
KEEEEGI.QES.EE.Q | |
Retrocopy | KEEEEGILQESPEEAQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001061 | 1 retrocopy |
retro_amel_1637 ,
|
Callithrix jacchus | ENSCJAG00000015226 | 2 retrocopies | |
Homo sapiens | ENSG00000137309 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000010085 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000019529 | 2 retrocopies | |
Mus musculus | ENSMUSG00000046711 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000008303 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000029838 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000040884 | 6 retrocopies | |
Rattus norvegicus | ENSRNOG00000000488 | 1 retrocopy |