Parental gene:

RPS20, ENSPVAG00000016402

Aliases:None
Description:ribosomal protein S20 [Source:HGNC Symbol;Acc:10405]
Organism:Megabat (Pteropus vampyrus)
Coordinates:GeneScaffold_3982:552910..554182(-)


>ENSPVAG00000016402
ATGGCCTTTAAAGATACCGGAAAGACGCCCGTGGAACCAGAGGTGGCGATTCACCGAATTAGAATTACTTTGACCAGCCG
CAACGTAAAATCTTTGGAGAAGGTGTGTGCTGACTTGATCAGAGGTGCGAAGGACAAGAATCTCAAAGTGAAAGGACCAG
TTCGGATGCCCACCAAGACTCTGAGAATCACTACAAGAAAAACTCCCTGTGGAGAAGGTTCTAAGACTTGGGATCGTTTT
CAGATGAGGATCCACAAGCGACTCATTGACTTGCACAGCCCTTCTGAGATTGTTAAGCAGATTACTTCCATCAGTATTGA
GCCAGGAGTTGAGGTTGAAGTCACCATTGCAGATGCTTAA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006087 ortholog_one2one 17 retrogenes
retro_amel_1067, retro_amel_1142, retro_amel_1146, retro_amel_1245, retro_amel_1405, retro_amel_1409, retro_amel_1442, retro_amel_1579, retro_amel_1619, retro_amel_1825, retro_amel_281, retro_amel_299, retro_amel_437, retro_amel_495, retro_amel_599, retro_amel_709, retro_amel_98,
Macropus eugenii ENSMEUG00000014171 ortholog_one2one 21 retrogenes
retro_meug_100, retro_meug_1015, retro_meug_1058, retro_meug_1170, retro_meug_1313, retro_meug_1614, retro_meug_1702, retro_meug_1761, retro_meug_1777, retro_meug_1831, retro_meug_1911, retro_meug_1951, retro_meug_2065, retro_meug_2110, retro_meug_2187, retro_meug_659, retro_meug_710, retro_meug_723, retro_meug_818, retro_meug_892, retro_meug_928,
Myotis lucifugus ENSMLUG00000029059 ortholog_one2one 2 retrogenes
retro_mluc_1187, retro_mluc_546,
Macaca mulatta ENSMMUG00000021314 ortholog_one2many 1 retrogene
retro_mmul_16,
Monodelphis domestica ENSMODG00000009114 ortholog_one2one 6 retrogenes
retro_mdom_1701, retro_mdom_1735, retro_mdom_1738, retro_mdom_1814, retro_mdom_1817, retro_mdom_1943,
Mustela putorius furo ENSMPUG00000010452 possible_ortholog 15 retrogenes
retro_mputfur_1094, retro_mputfur_1188, retro_mputfur_1313, retro_mputfur_1366, retro_mputfur_1374, retro_mputfur_1432, retro_mputfur_238, retro_mputfur_249, retro_mputfur_320, retro_mputfur_418, retro_mputfur_424, retro_mputfur_433, retro_mputfur_620, retro_mputfur_77, retro_mputfur_819,
Nomascus leucogenys ENSNLEG00000001214 possible_ortholog 19 retrogenes
retro_nleu_1013, retro_nleu_1343, retro_nleu_1447, retro_nleu_1566, retro_nleu_1794, retro_nleu_1798, retro_nleu_1805, retro_nleu_1818, retro_nleu_2059, retro_nleu_2159, retro_nleu_2654, retro_nleu_2659, retro_nleu_2750, retro_nleu_2786, retro_nleu_2819, retro_nleu_2843, retro_nleu_3066, retro_nleu_382, retro_nleu_41,
Sarcophilus harrisii ENSSHAG00000011200 ortholog_one2one 10 retrogenes
retro_shar_135, retro_shar_228, retro_shar_418, retro_shar_436, retro_shar_441, retro_shar_443, retro_shar_450, retro_shar_504, retro_shar_544, retro_shar_785,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pvam_77 88.14 99.16
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2. retro_pvam_117 75.82 74.79
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3. retro_pvam_554 71.05 60.50
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4. retro_pvam_638 90.00 99.16
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5. retro_pvam_660 82.20 98.32
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6. retro_pvam_800 84.87 100.00
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7. retro_pvam_1355 67.50 66.39
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8. retro_pvam_1358 82.76 95.80
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Download FASTA sequences of all ENSPVAG00000016402 retrocopies