RetrogeneDB ID: | retro_amel_709 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192583.1:449381..449730(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS20 | ||
Ensembl ID: | ENSAMEG00000006087 | ||
Aliases: | None | ||
Description: | ribosomal protein S20 [Source:HGNC Symbol;Acc:10405] |
Percent Identity: | 84.87 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKG-PVRMPTKTLRITTRKTPC |
AFKDTGKTPVEPEVAIHRIRITL.S.NVKSLEKVCADLIRGAKEKNLKVK..P..MPTKTLRI.TRKT.. | |
Retrocopy | AFKDTGKTPVEPEVAIHRIRITLRSWNVKSLEKVCADLIRGAKEKNLKVKD<PFQMPTKTLRIGTRKTA* |
Parental | GEG-SKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIETGVEVEVTIAD |
GEG..KTWDRFQMR.HKRL.DLH.PSE.VK..TSISIE.GVEVEVTIAD | |
Retrocopy | GEG<LKTWDRFQMRLHKRLSDLHRPSETVKPVTSISIESGVEVEVTIAD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |