Parental gene:

GPBP1L1, ENSRNOG00000037595

Aliases:None
Description:Vasculin-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q3KR53]
Organism:Rat (Rattus norvegicus)
Coordinates:5:139209460..139235050(+)


>ENSRNOG00000037595
ATGGCGCAGCATGACTTTGTTCCTGCTTGGCTAAATTTTTCAACGCCACAGTCAGCTAAGTCATCTACAGCCACCTTTGA
CAAACACGGAGAGCACCTATCCCGTGGAGAAGGTAGATTTGGAATAAGCCGTCGTAGACATAATTCCTCTGATGGCTTTT
TTAACAATGGACCTCTGCGGACTACAGGAGATTCTTGGCACCAACCCTCCCTATTCCGCCATGACTCTGTTGACTCTGGT
GTCTCTAAGGGAGCGTATGCCGGAACCACAGGGAATCTGTCTGGTTGGCATGGCTCTTCCCGAGGTCATGATGGCATGAG
CCAACGTGCTGGAGGTAGCACGGGAAACCACCGACACTGGAACGGCAGCTTCCATTCCCGGAAAGGCTGTGCCTTTCAAG
AAAAAACACCAACTGAAATTAGGGAAGAGAAAAAAGAGGATAAAGTAGAAAAGTTGCAGTTTGAAGAGGAAGACTTCCCT
TCTTTGAATCCAGAAGCTGGCAAACAGAATCAGCCATGCAGACCTATTGGGACCCCTTCTGGAGTGTGGGAAAATCCACC
TAGTGCCAAGCAACCCTCAAAGATGCTAGTCATCAAAAAAATTTCCAAAGAGGATCCTGCTGCCGCCTTTTCCGCTGCAT
TTACCTCAGGATCCCACCATGCAAATGGGAACAAAGTGTCAACCATGGTCCCGAGTGTTTATAAGAACTTGGTTCCCAAG
CCTGCACCACCTCCCTCTAAGCCCAACGCATGGAAAGCTAACAGAATGGAACACAAACCTGGATCACTTTCCTCCAGCCG
GGAGGCTGCTTTGACCAATCCAGTTTCTGTTACTAAACCAGTGGTACTAGCTGCTGGTGTAGTTCTCAACGCTCCCAAAG
AGAGTCCCTCCAGTACTACCCCTCCGATAGAGATCAGCTCCTCTCGCCTGACCAAATTGACCCGACGAACCACAGACAGG
AAGAGCGAGTTCCTGAAGACTCTGAAGGATGAGCGCAATGAAGACTGCTCCCAAAGTAGAGACTGTGACAAGCTGGAGGG
GCTAAGATTGGAGGGCAGCCACACACCTGAACCAAAGGAAAATGGAGAACAAGGTTGTCTTCAGAACGGGCTTTCTCTAC
CCATGGTAGAGGAGAGGGAGGTCCTGTCACACTCTCTAGAAGCAGAGCACAGGTTATTGAAAGCAATGGGGTGGCAGGAG
TATCCTGAAAATGATGAGAGTTGCCTTCCACTCACAGAGGATGAACTCAAGGAGTTTCACACGAGAACAGAACAGCTACG
AAGGAACGGGTTTGTAAAGAATGGCTTCTTACAAGGCCGTAGTTCCAGCCTGTTCTCCCCATGGAGAAGCACTTGCATTG
CAGAGTGTGAGGACTCAGACACGGAAACAAGCAGCAGCGAGACGTCAGACGACGACGCCTGGAAGTAG

Library Parental gene expression (RPM)
SRP017611_liver 7 .93 RPM
SRP017611_kidney 13 .19 RPM
SRP017611_brain 6 .76 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000010454 possible_ortholog 1 retrogene
retro_chof_53,
Microcebus murinus ENSMICG00000008449 ortholog_one2many 1 retrogene
retro_mmur_164,
Myotis lucifugus ENSMLUG00000012432 possible_ortholog 2 retrogenes
retro_mluc_211, retro_mluc_834,
Mus musculus ENSMUSG00000034042 ortholog_one2many 2 retrogenes
retro_mmus_1391, retro_mmus_405,
Oryctolagus cuniculus ENSOCUG00000017939 ortholog_one2many 1 retrogene
retro_ocun_427,
Otolemur garnettii ENSOGAG00000004134 ortholog_one2many 1 retrogene
retro_ogar_1859,
Ochotona princeps ENSOPRG00000001584 ortholog_one2many 1 retrogene
retro_opri_928,
Sorex araneus ENSSARG00000004852 possible_ortholog 1 retrogene
retro_sara_242,
Ictidomys tridecemlineatus ENSSTOG00000013491 ortholog_one2many 1 retrogene
retro_itri_243,
Tursiops truncatus ENSTTRG00000012202 possible_ortholog 1 retrogene
retro_ttru_1355,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_390 99.58 100.00
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Download FASTA sequences of all ENSRNOG00000037595 retrocopies