Parental gene:

SUMO2, ENSSSCG00000017212

Aliases:SUMO2, PSMT3, SMT3H2, Smt3A
Description:Sus scrofa SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) (SUMO2), mRNA. [Source:RefSeq mRNA;Acc:NM_213984]
Organism:Pig (Sus scrofa)
Coordinates:12:6079092..6092569(+)


>ENSSSCG00000017212
ATGGCCGACGAAAAGCCCAAGGAAGGAGTCAAGACTGAGAACAACGATCATATTAATTTGAAGGTGGCGGGGCAGGATGG
TTCTGTGGTGCAGTTTAAGATTAAGAGGCATACACCACTTAGTAAACTAATGAAAGCCTATTGTGAACGACAGGGTTTGT
CAATGAGGCAGATCAGATTCCGATTTGACGGGCAGCCAATCAATGAAACAGACACACCTGCACAGTTGGAAATGGAGGAT
GAAGATACAATTGATGTGTTCCAGCAGCAGACAGGAGGTGTCTACTAA

Library Parental gene expression (RPM)
SRP014902_placenta 46 .46 RPM
SRP014902_testis 114 .15 RPM
SRP018288_heart 81 .17 RPM
SRP018288_kidney 121 .56 RPM
SRP018288_liver 50 .53 RPM
SRP018288_lung 85 .33 RPM
SRP018856_adipose 126 .23 RPM
SRP035408_brain 115 .29 RPM
SRP035408_liver 37 .28 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009189 ortholog_one2one 13 retrogenes
retro_amel_1097, retro_amel_1125, retro_amel_1199, retro_amel_1263, retro_amel_1434, retro_amel_152, retro_amel_1665, retro_amel_276, retro_amel_35, retro_amel_616, retro_amel_653, retro_amel_662, retro_amel_722,
Cavia porcellus ENSCPOG00000004581 ortholog_one2one 9 retrogenes
retro_cpor_1029, retro_cpor_1297, retro_cpor_1496, retro_cpor_202, retro_cpor_357, retro_cpor_823, retro_cpor_838, retro_cpor_869, retro_cpor_894,
Homo sapiens ENSG00000188612 ortholog_one2one 2 retrogenes
retro_hsap_4036, retro_hsap_4095,
Loxodonta africana ENSLAFG00000025811 possible_ortholog 10 retrogenes
retro_lafr_104, retro_lafr_1222, retro_lafr_1240, retro_lafr_200, retro_lafr_254, retro_lafr_324, retro_lafr_36, retro_lafr_488, retro_lafr_858, retro_lafr_888,
Monodelphis domestica ENSMODG00000007222 possible_ortholog 11 retrogenes
retro_mdom_1263, retro_mdom_1472, retro_mdom_1474, retro_mdom_1560, retro_mdom_1598, retro_mdom_1755, retro_mdom_237, retro_mdom_378, retro_mdom_517, retro_mdom_788, retro_mdom_986,
Oryctolagus cuniculus ENSOCUG00000028195 ortholog_one2many 5 retrogenes
retro_ocun_110, retro_ocun_136, retro_ocun_175, retro_ocun_22, retro_ocun_46,
Pongo abelii ENSPPYG00000029777 ortholog_one2one 2 retrogenes
retro_pabe_164, retro_pabe_84,
Pan troglodytes ENSPTRG00000042199 ortholog_one2one 19 retrogenes
retro_ptro_1004, retro_ptro_1183, retro_ptro_1263, retro_ptro_135, retro_ptro_143, retro_ptro_1775, retro_ptro_2051, retro_ptro_2147, retro_ptro_2212, retro_ptro_2247, retro_ptro_2252, retro_ptro_2400, retro_ptro_2463, retro_ptro_2528, retro_ptro_2605, retro_ptro_2666, retro_ptro_2759, retro_ptro_3260, retro_ptro_65,
Sus scrofa ENSSSCG00000024026 within_species_paralog 2 retrogenes
retro_sscr_1089, retro_sscr_320,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_123 57.50 81.05
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2. retro_sscr_249 71.91 92.63
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3. retro_sscr_277 56.98 88.42
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4. retro_sscr_409 87.63 100.00
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5. retro_sscr_591 75.86 91.58
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6. retro_sscr_684 57.73 100.00
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7. retro_sscr_754 81.40 90.53
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8. retro_sscr_765 77.89 98.95
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9. retro_sscr_814 89.58 100.00
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10. retro_sscr_847 60.56 74.74
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11. retro_sscr_969 96.77 65.26
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12. retro_sscr_1112 77.89 100.00
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13. retro_sscr_1132 58.00 52.63
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14. retro_sscr_1147 85.71 58.95
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15. retro_sscr_1148 87.10 97.89
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Download FASTA sequences of all ENSSSCG00000017212 retrocopies