Parental gene: | SUMO2, ENSSSCG00000017212 |
| Aliases: | SUMO2, PSMT3, SMT3H2, Smt3A |
| Description: | Sus scrofa SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) (SUMO2), mRNA. [Source:RefSeq mRNA;Acc:NM_213984] |
| Organism: | Pig (Sus scrofa) |
| Coordinates: | 12:6079092..6092569(+) |
>ENSSSCG00000017212
ATGGCCGACGAAAAGCCCAAGGAAGGAGTCAAGACTGAGAACAACGATCATATTAATTTGAAGGTGGCGGGGCAGGATGG
TTCTGTGGTGCAGTTTAAGATTAAGAGGCATACACCACTTAGTAAACTAATGAAAGCCTATTGTGAACGACAGGGTTTGT
CAATGAGGCAGATCAGATTCCGATTTGACGGGCAGCCAATCAATGAAACAGACACACCTGCACAGTTGGAAATGGAGGAT
GAAGATACAATTGATGTGTTCCAGCAGCAGACAGGAGGTGTCTACTAA
ATGGCCGACGAAAAGCCCAAGGAAGGAGTCAAGACTGAGAACAACGATCATATTAATTTGAAGGTGGCGGGGCAGGATGG
TTCTGTGGTGCAGTTTAAGATTAAGAGGCATACACCACTTAGTAAACTAATGAAAGCCTATTGTGAACGACAGGGTTTGT
CAATGAGGCAGATCAGATTCCGATTTGACGGGCAGCCAATCAATGAAACAGACACACCTGCACAGTTGGAAATGGAGGAT
GAAGATACAATTGATGTGTTCCAGCAGCAGACAGGAGGTGTCTACTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP014902_placenta | 46 .46 RPM |
| SRP014902_testis | 114 .15 RPM |
| SRP018856_adipose | 126 .23 RPM |
| SRP018288_kidney | 121 .56 RPM |
| SRP018288_lung | 85 .33 RPM |
| SRP018288_liver | 50 .53 RPM |
| SRP018288_heart | 81 .17 RPM |
| SRP035408_liver | 37 .28 RPM |
| SRP035408_brain | 115 .29 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000009189 | ortholog_one2one | 13 retrogenes | |
| Cavia porcellus | ENSCPOG00000004581 | ortholog_one2one | 9 retrogenes | |
| Homo sapiens | ENSG00000188612 | ortholog_one2one | 2 retrogenes | |
| Loxodonta africana | ENSLAFG00000025811 | possible_ortholog | 10 retrogenes | |
| Monodelphis domestica | ENSMODG00000007222 | possible_ortholog | 11 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000028195 | ortholog_one2many | 5 retrogenes | |
| Pongo abelii | ENSPPYG00000029777 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000042199 | ortholog_one2one | 19 retrogenes |
retro_ptro_1004, retro_ptro_1183, retro_ptro_1263, retro_ptro_135, retro_ptro_143, retro_ptro_1775, retro_ptro_2051, retro_ptro_2147, retro_ptro_2212, retro_ptro_2247, retro_ptro_2252, retro_ptro_2400, retro_ptro_2463, retro_ptro_2528, retro_ptro_2605, retro_ptro_2666, retro_ptro_2759, retro_ptro_3260, retro_ptro_65,
|
| Sus scrofa | ENSSSCG00000024026 | within_species_paralog | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_sscr_123 | 57.50 | 81.05 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_sscr_249 | 71.91 | 92.63 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_sscr_277 | 56.98 | 88.42 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_sscr_409 | 87.63 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_sscr_591 | 75.86 | 91.58 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_sscr_684 | 57.73 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_sscr_754 | 81.40 | 90.53 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_sscr_765 | 77.89 | 98.95 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_sscr_814 | 89.58 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_sscr_847 | 60.56 | 74.74 | Please wait, loading | Please wait, loading | Please wait, loading |
| 11. | retro_sscr_969 | 96.77 | 65.26 | Please wait, loading | Please wait, loading | Please wait, loading |
| 12. | retro_sscr_1112 | 77.89 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 13. | retro_sscr_1132 | 58.00 | 52.63 | Please wait, loading | Please wait, loading | Please wait, loading |
| 14. | retro_sscr_1147 | 85.71 | 58.95 | Please wait, loading | Please wait, loading | Please wait, loading |
| 15. | retro_sscr_1148 | 87.10 | 97.89 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSSSCG00000017212 retrocopies