RetrogeneDB ID: | retro_cpor_1297 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_67:3415830..3416115(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SUMO2 | ||
Ensembl ID: | ENSCPOG00000004581 | ||
Aliases: | None | ||
Description: | small ubiquitin-like modifier 2 [Source:HGNC Symbol;Acc:11125] |
Percent Identity: | 89.47 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINET |
.ADEK.KE.VKTENNDHINLKV.GQDGS.VQFKIKRHTPLSKLMKAYCE.QGL.MRQI.F.FDGQPINET | |
Retrocopy | LADEKAKE*VKTENNDHINLKVVGQDGSEVQFKIKRHTPLSKLMKAYCEHQGLPMRQITFQFDGQPINET |
Parental | DTPAQLEMEDEDTIDVFQQQTGGVY |
DTPAQLEMEDEDTIDVFQQQT.GVY | |
Retrocopy | DTPAQLEMEDEDTIDVFQQQTRGVY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .12 RPM | 36 .58 RPM |
SRP017611_kidney | 0 .00 RPM | 34 .76 RPM |
SRP017611_liver | 0 .04 RPM | 19 .76 RPM |
SRP040447_lung | 0 .00 RPM | 36 .67 RPM |
SRP040447_skeletal_muscle | 0 .03 RPM | 17 .50 RPM |