RetrogeneDB ID: | retro_ocun_110 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 12:59449807..59450095(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000028095 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000028195 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 97.73 % |
Parental protein coverage: | 92.63 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINESDTPAQLE |
.GVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINESDTPAQLE | |
Retrocopy | QGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINESDTPAQLE |
Parental | MEDEDTIDVFQQQTGGVY |
MEDED.IDVFQQQTGGVY | |
Retrocopy | MEDEDRIDVFQQQTGGVY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 7 .40 RPM |
SRP017611_kidney | 0 .10 RPM | 6 .79 RPM |
SRP017611_liver | 0 .00 RPM | 0 .77 RPM |