RetrogeneDB ID: | retro_itri_1858 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH394194.1:69810..70521(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPM4 | ||
Ensembl ID: | ENSSTOG00000024252 | ||
Aliases: | None | ||
Description: | tropomyosin 4 [Source:HGNC Symbol;Acc:12013] |
Percent Identity: | 83.12 % |
Parental protein coverage: | 95.18 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KKLKGTEDELDKYSEDLKDAQEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAE |
.K.....................L.........A..DVAALNRRIQLVEEELDRAQERLATALQKLEEAE | |
Retrocopy | RKIQALQQQAVELEDRAQSLLRELDCEREQREKAKDDVAALNRRIQLVEEELDRAQERLATALQKLEEAE |
Parental | KAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAEERAEVSE |
KAADES.RGMKVI.NR.MKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAEERAEVSE | |
Retrocopy | KAADESDRGMKVIQNRTMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAEERAEVSE |
Parental | LKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLE |
LKC.DLEEELKNVTNNLKSLEAASEKYSEKEDKYE.EIKLLSDKLKEAETRAEF.ERTVAKLEKTIDDLE | |
Retrocopy | LKCEDLEEELKNVTNNLKSLEAASEKYSEKEDKYELEIKLLSDKLKEAETRAEFEERTVAKLEKTIDDLE |
Parental | EKLAQAKEENVGLHQTLDQTLNELNCI |
EKLAQAKEEN.GLHQTLDQTLNELNCI | |
Retrocopy | EKLAQAKEENMGLHQTLDQTLNELNCI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000004553 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000015796 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000014135 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000014510 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000014882 | 1 retrocopy | |
Mus musculus | ENSMUSG00000031799 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005413 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000010637 | 10 retrocopies | |
Pteropus vampyrus | ENSPVAG00000009755 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000009955 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000023525 | 6 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000024252 | 1 retrocopy |
retro_itri_1858 ,
|
Tupaia belangeri | ENSTBEG00000012927 | 7 retrocopies | |
Tarsius syrichta | ENSTSYG00000010642 | 9 retrocopies | |
Tursiops truncatus | ENSTTRG00000014542 | 2 retrocopies |