Parental gene:

EEF1A1, ENSTBEG00000012151

Aliases:None
Description:eukaryotic translation elongation factor 1 alpha 1 [Source:HGNC Symbol;Acc:3189]
Organism:Treeshrew (Tupaia belangeri)
Coordinates:GeneScaffold_3490:8864..11840(-)


>ENSTBEG00000012151
ATGGGAAAGGAGAAGACTCACATCAACATCGTTGTCATTGGACACGTAGATTCCGGCAAGTCCACCACTACTGGCCATCT
GATCTACAAATGTGGTGGGATCGACAAAAGAACCATCGAGAAATTCGAGAAGGAGGCTGCTGAGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGCTGACTGTGCTGTCCTGATTGTTGCTGCTGGTGTTGGTGAATTTGAGGCTGGTATCTCCAAGAACGGGCAGACCC
GTGAGCATGCCCTTCTGGCTTACACACTGGGTGTGAAACAACTAATTGTTGGTGTTAACAAAATGGATTCTACTGAGCCA
CCCTACAGTCAGAAGAGATATGAGGAAATTGTTAAAGAAGTCAGCACCTACATTAAGAAAATTGGCTACAATCCCGACAC
AGTAGCATTTGTGCCAATTTCTGGTTGGAATGGTGACAACATGTTGGAGCCAAGTGCTAATATGCCATGGTTCAAGGGAT
GGAAAGTCACCCGTAAAGATGGCAATGCCAGTGGAACTACGCTGCTTGAAGCTCTGGATTGTATCCTGCCACCAACTCGT
CCAACTGACAAGCCCTTGCGTCTGCCCCTCCAGGATGTGTACAAAATTGGTGGTATTGGCACTGTTCCTGTTGGCCGAGT
GGAGACTGGTGTGCTCAAACCTGGTATGGTGGTCACCTTTGCACCAGTCAATGTGACAACTGAAGTCAAGTCGGTTGAAA
TGCACCATGAAGCTCTGAGTGAAGCTCTTCCCGGGGACAACGTGGGTTTCAATGTCAAGAACGTGTCTGTCAAAGATGTT
CGACGTGGCAATGTTGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCTGGCTTCACTGCTCAGGTGATTATCCT
GAACCATCCAGGCCAAATCAGTGCTGGCTATGCCCCTGTACTGGATTGTCACACAGCTCACATTGCTTGCAAATTTGCTG
AGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAATCTGGTGATGCTGCC
ATTGTTGACATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCTGACTATCCTCCTCTGGGTCGTTTTGCTGTTCG
TGATATGAGACAGACAGTTGCTGTTGGTGTCATCAAAGCCGTGGACAAGAAGGCTGCTGGAGCTGGCAAGGTCACCAAGT
CTGCCCAGAAAGCTCAGAAGGCTAAATGA

Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000013249 possible_ortholog 1 retrogene
retro_cfam_1007,
Equus caballus ENSECAG00000022260 possible_ortholog 1 retrogene
retro_ecab_802,
Echinops telfairi ENSETEG00000004236 ortholog_one2one 14 retrogenes
retro_etel_1189, retro_etel_1248, retro_etel_1260, retro_etel_1429, retro_etel_1436, retro_etel_1472, retro_etel_1578, retro_etel_1602, retro_etel_1682, retro_etel_1808, retro_etel_2135, retro_etel_366, retro_etel_411, retro_etel_830,
Loxodonta africana ENSLAFG00000028081 possible_ortholog 1 retrogene
retro_lafr_651,
Microcebus murinus ENSMICG00000015319 possible_ortholog 21 retrogenes
retro_mmur_1027, retro_mmur_1116, retro_mmur_1145, retro_mmur_1182, retro_mmur_1190, retro_mmur_12, retro_mmur_1282, retro_mmur_1316, retro_mmur_1339, retro_mmur_1343, retro_mmur_1350, retro_mmur_1568, retro_mmur_171, retro_mmur_26, retro_mmur_273, retro_mmur_49, retro_mmur_682, retro_mmur_729, retro_mmur_825, retro_mmur_877, retro_mmur_9,
Monodelphis domestica ENSMODG00000018533 possible_ortholog 4 retrogenes
retro_mdom_1053, retro_mdom_1146, retro_mdom_311, retro_mdom_792,
Otolemur garnettii ENSOGAG00000009152 ortholog_one2one 10 retrogenes
retro_ogar_1215, retro_ogar_1622, retro_ogar_1779, retro_ogar_1840, retro_ogar_2281, retro_ogar_2526, retro_ogar_2557, retro_ogar_3013, retro_ogar_3046, retro_ogar_3271,
Pongo abelii ENSPPYG00000016777 possible_ortholog 1 retrogene
retro_pabe_12,
Tupaia belangeri ENSTBEG00000017170 within_species_paralog 16 retrogenes
retro_tbel_1335, retro_tbel_1406, retro_tbel_2677, retro_tbel_2899, retro_tbel_2966, retro_tbel_3336, retro_tbel_348, retro_tbel_3485, retro_tbel_3658, retro_tbel_3727, retro_tbel_3948, retro_tbel_4091, retro_tbel_4127, retro_tbel_4290, retro_tbel_4507, retro_tbel_4527,
Drosophila melanogaster FBgn0000557 ortholog_many2many 1 retrogene
retro_dmel_9,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_tbel_166 93.20 72.51
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2. retro_tbel_259 84.42 66.45
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3. retro_tbel_282 85.36 60.39
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4. retro_tbel_338 86.69 75.97
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5. retro_tbel_354 81.78 55.41
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6. retro_tbel_360 92.43 54.33
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7. retro_tbel_372 98.02 76.62
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8. retro_tbel_473 88.98 54.55
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9. retro_tbel_588 82.37 74.03
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10. retro_tbel_620 80.60 57.58
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11. retro_tbel_903 90.15 56.93
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12. retro_tbel_1084 88.28 62.55
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13. retro_tbel_1330 80.06 76.41
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14. retro_tbel_1373 81.27 53.90
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15. retro_tbel_1452 84.42 59.52
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16. retro_tbel_1841 96.70 71.86
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17. retro_tbel_1969 89.36 76.62
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18. retro_tbel_1994 97.29 62.77
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19. retro_tbel_2088 65.01 76.41
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20. retro_tbel_2091 86.72 76.62
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21. retro_tbel_2179 95.20 76.62
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22. retro_tbel_2205 75.17 64.94
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23. retro_tbel_2206 98.06 66.88
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24. retro_tbel_2218 86.90 54.11
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25. retro_tbel_2232 90.77 56.06
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26. retro_tbel_2419 93.70 51.30
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27. retro_tbel_2505 96.88 54.33
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28. retro_tbel_2627 92.38 64.94
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29. retro_tbel_2718 85.35 76.62
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30. retro_tbel_2738 87.78 66.67
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31. retro_tbel_2758 95.32 50.87
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32. retro_tbel_2976 98.51 72.73
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33. retro_tbel_3032 91.86 55.63
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34. retro_tbel_3065 72.20 55.63
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35. retro_tbel_3067 82.96 76.62
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36. retro_tbel_3281 95.93 53.25
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37. retro_tbel_3307 81.68 71.65
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38. retro_tbel_3315 84.50 55.41
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39. retro_tbel_3813 86.55 76.41
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40. retro_tbel_3865 86.22 67.32
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41. retro_tbel_3967 82.88 55.41
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42. retro_tbel_4125 86.22 60.17
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43. retro_tbel_4192 77.03 76.62
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44. retro_tbel_4282 84.79 76.62
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45. retro_tbel_4352 90.53 56.93
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46. retro_tbel_4370 87.05 59.74
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47. retro_tbel_4466 94.60 76.19
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48. retro_tbel_4496 88.70 62.77
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49. retro_tbel_4639 85.20 53.46
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50. retro_tbel_4660 96.39 59.74
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51. retro_tbel_4695 77.49 66.67
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Download FASTA sequences of all ENSTBEG00000012151 retrocopies